ID:

ocu-mir-103-1

 Coordinate:

chr3:49920393-49920478 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.1 -34.1 -34.1
mature
  1. chr18:37563534-37563554 -
  2. chr3:49920407-49920427 -
  3. chr4:10776396-10776416 +
star

Sense Strand Reads

TTTTGTTTTTTCCTATCAATGTTCCCATTGATAGCAAAATCCTTAGAAGTTTCTTACTGCCCTCGGCTTCTTTACAGTGCTGCCTTGTTGCATATGGATCAAGCAGCATTGTACAGGGCTATGAAGGCATTGAGACTCGCTCTTCACATGATACTTCAGTGGTGTGTACTGTTTGCTCTAAGAAAA
*************************************************..(((((.((((.((((((.((.(((((((((((.(((............)))))))))))))).))))))..)).)))).)))))..************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.....................................................................................................AGCAGCATTGTACAGGGCTAT................................................................ 21 0 3 462.00 1386 835 551
.....................................................................................................AGCAGCATTGTACAGGGCTATGAT............................................................. 24 1 2 195.00 390 389 1
.....................................................................................................AGCAGCATTGTACAGGGCTATG............................................................... 22 0 2 143.00 286 147 139
.....................................................................................................AGCAGCATTGTACAGGGCTATGA.............................................................. 23 0 2 58.50 117 95 22
.....................................................................................................AGCAGCATTGTACAGGGCTATGT.............................................................. 23 1 2 52.00 104 82 22
.....................................................................................................AGCAGCATTGTACAGGGCT.................................................................. 19 0 3 35.00 105 65 40
.....................................................................................................AGCAGCATTGTACAGGGCTA................................................................. 20 0 3 30.00 90 57 33
....................................................................................................AAGCAGCATTGTACAGGGCTAT................................................................ 22 0 3 13.67 41 18 23
.........................................................................................................GCATTGTACAGGGCTAT................................................................ 17 0 3 8.67 26 3 23
....................................................................................................AAGCAGCATTGTACAGGGCTATG............................................................... 23 0 2 6.00 12 2 10
.....................................................................................................AGCAGCATTGTACAGGGCTATA............................................................... 22 1 3 5.00 15 5 10
.................................................................GCTTCTTTACAGTGCTGCCTTGAT................................................................................................. 24 1 1 5.00 5 5 0
......................................................................................................GCAGCATTGTACAGGGCTAT................................................................ 20 0 3 4.33 13 6 7
................................................................GGCTTCTTTACAGTGCTGCCTTG................................................................................................... 23 0 1 4.00 4 4 0
.........................................................................................................GCATTGTACAGGGCTATGAT............................................................. 20 1 2 3.50 7 7 0
.........................................................................................................GCATTGTACAGGGCTATG............................................................... 18 0 2 3.00 6 0 6
......................................................................................................GCAGCATTGTACAGGGCTATGT.............................................................. 22 1 2 3.00 6 5 1
................................................................GGCTTCTTTACAGTGCTGCCTTTAT................................................................................................. 25 2 1 3.00 3 3 0
.....................................................................................................AGCAGCATTGTACATGGCTATGAT............................................................. 24 2 2 3.00 6 6 0
.......................................................................................................CAGCATTGTACAGGGCTAT................................................................ 19 0 3 2.67 8 1 7
..........................................................................................................CATTGTACAGGGCTAT................................................................ 16 0 4 2.25 9 0 9
................................................................GGCTTCTTTACAGTGCTGCCTTGA.................................................................................................. 24 1 1 2.00 2 2 0
................................................................GGCTTCTTTACAGTGCTGCCTTGTT................................................................................................. 25 0 1 2.00 2 2 0
................................................................AGCTTCTTTACAGTGCTGCCTTGAT................................................................................................. 25 2 2 2.00 4 4 0
.................................................................................................AAAAAGCAGCATTGTACAGGGCTATGA.............................................................. 27 2 1 2.00 2 2 0
...................................................................................................AAAGCAGCATTGTACAGGGCTAT................................................................ 23 1 3 2.00 6 6 0
................................................................GGCTTCTTTACAGTGCTGCCTTGT.................................................................................................. 24 0 1 2.00 2 2 0
.........................................................................................................GCATTGTACAGGGCTA................................................................. 16 0 3 1.67 5 3 2
.....................................................................................................AGCAGCATTGTACAGTGCTAT................................................................ 21 1 3 1.67 5 4 1
.....................................................................................................AGCAGCATTGTACAGGGCTATT............................................................... 22 1 3 1.67 5 2 3
.....................................................................................................AGCAGCATTGTACAGGGCTT................................................................. 20 1 3 1.67 5 5 0
..........................................................................................................CATTGTACAGGGCTATGAT............................................................. 19 1 3 1.67 5 5 0
.....................................................................................................AGCAGCATTGTACAGGTCTAT................................................................ 21 1 3 1.67 5 4 1
......................................................................................................GCAGCATTGTACAGGGCTATGAT............................................................. 23 1 2 1.50 3 3 0
.........................................................................................................GCATTGTACAGGGCTATGT.............................................................. 19 1 2 1.50 3 2 1
.....................................................................................................TGCAGCATTGTACAGGGCTAT................................................................ 21 1 3 1.33 4 1 3
.....................................................................................................AGCAGCCTTGTACAGGGCTAT................................................................ 21 1 3 1.33 4 3 1
.....................................................................................................AGCAGCGTTGTACAGGGCTAT................................................................ 21 1 3 1.33 4 2 2
.....................................................................................................AGCAGCATTGTACAGGGCTATGTA............................................................. 24 1 2 1.00 2 2 0
....................................................................................................AAGCAGCATTGTACAGGGCTATT............................................................... 23 1 3 1.00 3 3 0
..........................................................................................................CATTGTACAGGGCTATG............................................................... 17 0 2 1.00 2 0 2
.....................................................................................................AGCAGCATTGCACAGGGCTAT................................................................ 21 1 3 1.00 3 2 1
................................................................GGCTTCTTTACAGTGCTGCCTTGTTGCAT............................................................................................. 29 0 1 1.00 1 1 0
.....................................................................................................AGCAGCATTGTACAGGGCTATGAC............................................................. 24 1 2 1.00 2 2 0
.....................................................................................................AGCAGCATTGTACAGGGCTATGTAGCC.......................................................... 27 2 1 1.00 1 0 1
...........................................................................................................ATTGTACAGGGCTATGA.............................................................. 17 0 3 1.00 3 3 0
...............................................................AGGCTTCTTTACAGTGCTGCCTT.................................................................................................... 23 1 1 1.00 1 0 1
.....................................................................................................AGCAGCATTGTACAGGGCTATGCAC............................................................ 25 2 2 1.00 2 0 2
.........................................................................................................GCATTGTACAGGGCTATGA.............................................................. 19 0 2 1.00 2 2 0
.....................................................................................................AGCAGCATTGTACAGGGCTAA................................................................ 21 1 3 1.00 3 1 2
.....................................................................................................AGCAGCATTGGACAGGGCTAT................................................................ 21 1 3 1.00 3 1 2
.....................................................................................................AGCAGCATTGTACAGGGCTATGATGC........................................................... 26 2 1 1.00 1 0 1
.....................................................................................................AGCAGCATTGTACAGGGCTATGC.............................................................. 23 1 2 1.00 2 2 0
............................................................................................................TTGTACAGGGCTATGA.............................................................. 16 0 3 1.00 3 2 1
................................................................................................GAAAAAGCAGCATTGTACAGGGCTAT................................................................ 26 2 1 1.00 1 0 1
.....................................................................................................ATCAGCATTGTACAGGGCTA................................................................. 20 1 3 1.00 3 3 0
................................................................GGCTTCTTTACAGTGCTGC....................................................................................................... 19 0 1 1.00 1 1 0
......................................................................................................GCAGCATTGTACAGGGCTATG............................................................... 21 0 2 1.00 2 0 2
................................................................GGCTTCTTTACAGTGCTGCCTTT................................................................................................... 23 1 1 1.00 1 1 0
....................................................................................................AAGCAGCATTGTACAGGGCT.................................................................. 20 0 3 1.00 3 0 3
.................................................................GCTTCTTTACAGTGCTGCCTTTT.................................................................................................. 23 1 2 1.00 2 2 0
.....................................................................................................AGCCGCATTGTACAGGGCTAT................................................................ 21 1 3 1.00 3 2 1
.......................................................................................................CAGCATTGTACAGGGCTATG............................................................... 20 0 2 1.00 2 1 1
.....................................................................................................AGCAGCATTGAACAGGGCTAT................................................................ 21 1 3 1.00 3 1 2
.....................................................................................................AGCAGCATTGTACAGGGC................................................................... 18 0 3 1.00 3 3 0
.....................................................................................................AGCAGCATTGTACAGGG.................................................................... 17 0 3 0.67 2 2 0
.....................................................................................................AGCAGCAATGTACAGGGCTAT................................................................ 21 1 3 0.67 2 1 1
.....................................................................................................AGCAGCATTGTACAGGGCTATAT.............................................................. 23 2 3 0.67 2 2 0
.....................................................................................................AGCAGCATTGTGCAGGGCTAT................................................................ 21 1 3 0.67 2 1 1
....................................................................................................CAGCAGCATTGTACAGGGCTAT................................................................ 22 1 3 0.67 2 0 2
....................................................................................................AAGCAGCATTGTACAGGGCTA................................................................. 21 0 3 0.67 2 0 2
.....................................................................................................AGCAGCATTGTACAGGGCTATTT.............................................................. 23 2 3 0.67 2 0 2
.....................................................................................................CGCAGCATTGTACAGGGCTAT................................................................ 21 1 3 0.67 2 1 1
.........................................................................................................GCATTGTACAGGGCT.................................................................. 15 0 7 0.57 4 1 3
.....................................................................................................AGCGGCATTGTACAGGTCTATGAT............................................................. 24 3 2 0.50 1 1 0
.......................................................................................................CAGCATTGTACAGGGCTATGAT............................................................. 22 1 2 0.50 1 1 0
.....................................................................................................AGCAGCATTGTACAGGACTATGAT............................................................. 24 2 2 0.50 1 1 0
.....................................................................................................AGAAGCATTGTACAGGGCTAT................................................................ 21 1 4 0.50 2 1 1
.....................................................................................................AGCGGCATTGTACAGGGCTATG............................................................... 22 1 2 0.50 1 0 1
.....................................................................................................AGCAGCATTGTACAGGGCTATGTT............................................................. 24 2 2 0.50 1 1 0
.....................................................................................................AGCAGCATTGTACAGGGCTATGATTG........................................................... 26 2 2 0.50 1 0 1
.....................................................................................................AGCAGCGTTGTACAGGGCTATG............................................................... 22 1 2 0.50 1 1 0
.....................................................................................................AGCAGCATCGTACAGGGCTATGA.............................................................. 23 1 2 0.50 1 1 0
.....................................................................................................TGCAGCATTGTACAGGGCTATG............................................................... 22 1 2 0.50 1 0 1
.......................................................................................................CAGCATTGTACAGGGCTATGATCGTA......................................................... 26 3 2 0.50 1 0 1
.....................................................................................................AGCAGCATTGTACAGGGCTATGAA............................................................. 24 0 2 0.50 1 1 0
.....................................................................................................AGCAGCAATGTACAGGGCTATG............................................................... 22 1 2 0.50 1 0 1
.....................................................................................................AGCAGCATTGCACAGGGCTATGAT............................................................. 24 2 2 0.50 1 1 0
.....................................................................................................AGTAGCATTGTACAGGGCTATGAT............................................................. 24 2 2 0.50 1 1 0
......................................................................................................GCAGCATTGTACAGGGCTATGA.............................................................. 22 0 2 0.50 1 0 1
..........................................................................................................CATTGTACAGGGCTA................................................................. 15 0 4 0.50 2 1 1
.....................................................................................................AGAAGCATTGTACAGGGCTATGA.............................................................. 23 1 2 0.50 1 1 0
....................................................................................................AAGCAGAATTGTACAGGGCTATG............................................................... 23 1 2 0.50 1 0 1
..................................................................................................AAAAGCAGCATTGTACAGGGCTATG............................................................... 25 2 2 0.50 1 0 1
.....................................................................................................AGAAGCATTGTACAGGGCTATG............................................................... 22 1 2 0.50 1 1 0
.....................................................................................................AGCAGCATTGTACAGGGCTATCATGC........................................................... 26 3 2 0.50 1 0 1
.....................................................................................................AGCAGCATTGTACAGGGCCATGAT............................................................. 24 2 2 0.50 1 1 0
.....................................................................................................ATCAGCATTGTACAGGGCTATG............................................................... 22 1 2 0.50 1 1 0
.....................................................................................................AGCAGCATTGTACAGAGCTATG............................................................... 22 1 2 0.50 1 1 0
....................................................................................................AAGCAGCATTGTACAGGGCTATGA.............................................................. 24 0 2 0.50 1 0 1
...........................................................................................................ATTGTACAGGGCTAT................................................................ 15 0 7 0.43 3 3 0
..................................................................................................GAAAGCAGCATTGTACAGGGCTAT................................................................ 24 2 3 0.33 1 0 1
....................................................................................................TAGCAGCATTGTACAGGGCTAT................................................................ 22 1 3 0.33 1 0 1
.....................................................................................................AGTAGCATTGTACAGGGCTAT................................................................ 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATGGTACAGGGCTAT................................................................ 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTGTACAGGGCTTT................................................................ 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTGTCCAGGGCTAT................................................................ 21 1 3 0.33 1 1 0
....................................................................................................AAGCAACATTGTACAGGGCTAT................................................................ 22 1 3 0.33 1 0 1
........................................................................................................AGCATTGTACAGGGCTAT................................................................ 18 0 3 0.33 1 1 0
.....................................................................................................AGCAGCATTGTACAGGGCTATTAT............................................................. 24 2 3 0.33 1 1 0
......................................................................................................GCAGCATTGTACAGGGCT.................................................................. 18 0 3 0.33 1 1 0
.....................................................................................................AGCAGCATTGTACAGGGCTAC................................................................ 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTGTACCGGGCT.................................................................. 19 1 3 0.33 1 1 0
.....................................................................................................AGCAGCATTGTATAGGGCTAT................................................................ 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTTTACAGGGCTAT................................................................ 21 1 3 0.33 1 0 1
......................................................................................................GCAGCATTGTACAGGGCTATGTATC........................................................... 25 3 3 0.33 1 0 1
.....................................................................................................AGCAGCATTGTACTGGGCTAT................................................................ 21 1 3 0.33 1 1 0
.....................................................................................................GGCAGCATTGTACAGGGCTAT................................................................ 21 1 3 0.33 1 1 0
.....................................................................................................AGCAGCATTGTACCGGGCTAT................................................................ 21 1 3 0.33 1 1 0
.....................................................................................................AGCAGCATAGTACAGGGCTAT................................................................ 21 1 3 0.33 1 1 0
.......................................................................................................CAGCATTGTACAGGGCTA................................................................. 18 0 3 0.33 1 0 1
.....................................................................................................AGCAGCATTCTACAGGGCTAT................................................................ 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGTATTGTACAGGGCTAT................................................................ 21 1 3 0.33 1 1 0
.....................................................................................................AGCAGCATCGTACAGGGCTAT................................................................ 21 1 3 0.33 1 1 0
......................................................................................................GCAGCATAGTACAGGGCTAT................................................................ 20 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTGTACGGGGCTAT................................................................ 21 1 3 0.33 1 0 1
......................................................................................................GCAGCATTGTACAGGGCTA................................................................. 19 0 3 0.33 1 1 0
.....................................................................................................AGCAGCATTGTACAGGGGTAT................................................................ 21 1 3 0.33 1 0 1
.....................................................................................................AGCAGCATTATACAGGGCTAT................................................................ 21 1 4 0.25 1 0 1
...........................................................................................................ATTGTACAGGGCTATG............................................................... 16 0 4 0.25 1 0 1
.....................................................................................................AGCAGCATTGTACAGGGCTAGA............................................................... 22 2 5 0.20 1 0 1
.........................................................................................................ACATTGTACAGGGCTATG............................................................... 18 1 5 0.20 1 0 1
............................................................................................................TTGTACAGGGCTATG............................................................... 15 0 5 0.20 1 0 1
.....................................................................................................AGCAGCATTTTACAGGGCT.................................................................. 19 1 5 0.20 1 0 1
.........................................................................................................GCATTGCACAGGGCTATGAT............................................................. 20 2 6 0.17 1 1 0
........................................................................................................AGCATTGAACAGGGCTAT................................................................ 18 1 6 0.17 1 1 0
..........................................................................................................CATTGTACAGGGCTATGT.............................................................. 18 1 7 0.14 1 0 1
...........................................................................................................ATTGTACAGGGCTATGAT............................................................. 18 1 8 0.13 1 1 0
.....................................................................................................AGCAGCAATGTACAGGGCT.................................................................. 19 1 9 0.11 1 0 1
.........................................................................................................GCATTGGACAGGGCTATGAT............................................................. 20 2 12 0.08 1 1 0
.........................................................................................................GCATTGGACAGGGCTAT................................................................ 17 1 16 0.06 1 0 1
............................................................................................................TTGTACAGGGCTATGAT............................................................. 17 1 17 0.06 1 1 0

Anti-sense strand reads

AAAACAAAAAAGGATAGTTACAAGGGTAACTATCGTTTTAGGAATCTTCAAAGAATGACGGGAGCCGAAGAAATGTCACGACGGAACAACGTATACCTAGTTCGTCGTAACATGTCCCGATACTTCCGTAACTCTGAGCGAGAAGTGTACTATGAAGTCACCACACATGACAAACGAGATTCTTTT
*************************************************..(((((.((((.((((((.((.(((((((((((.(((............)))))))))))))).))))))..)).)))).)))))..************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:43 AM