ID:

ocu-mir-101b

 Coordinate:

chr1:49384656-49384752 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.7 -29.6 -29.4
mature
  1. chr1:49384673-49384692 -
  2. chr13:101340575-101340594 +
star

Sense Strand Reads

CCGTGATCATCTGTGGGTGGTGAGCTGGGTGGGAGGAAGTACTCAGCTAGATATGAGACTGAACTGTCCTTTTTCGGTTATCATGGTACCGATGCTGTATATCTGAAAGGTACAGTACTGTGATAACTGAAGAATGGTGGTGCCATCACATTGAGAAAGGGACAAGGCGTGTGGTGCAGCAGTGTAGCTATGAGCCA
**********************************************************....((((.((((((((((((((((((((......(((((((.........))))))))))))))))))))))))).))))))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
..............................................................................................................TACAGTACTGTGATAACTGA................................................................... 20 0 2 72.00 144 103 41
.............................................................................................................GTACAGTACTGTGATAACTGA................................................................... 21 0 2 37.00 74 50 24
.............................................................................................................GTACAGTACTGTGATAACTG.................................................................... 20 0 2 27.50 55 51 4
..............................................................................................................TACAGTACTGTGATAACTGAAT................................................................. 22 1 2 26.00 52 0 52
.............................................................................................................GTACAGTACTGTGATAACT..................................................................... 19 0 2 19.00 38 31 7
..............................................................................................................TACAGTACTGTGATAACTGAA.................................................................. 21 0 2 16.00 32 25 7
..............................................................................................................TACAGTACTGTGATAACTG.................................................................... 19 0 2 12.00 24 16 8
.............................................................................................................GTACAGTACTGTGATAGCTGA................................................................... 21 1 2 7.50 15 0 15
..............................................................................................................TACAGTACTGTGATAGCTGA................................................................... 20 1 2 6.50 13 0 13
.............................................................................................................GTACAGTACTGTGATAACTGAT.................................................................. 22 1 2 5.50 11 0 11
..............................................................................................................TACAGTACTGTGATAACTGAAG................................................................. 22 0 2 5.00 10 3 7
..............................................................................................................TACAGTACTGTGATAACTGAT.................................................................. 21 1 2 4.50 9 0 9
.........................................................................TCGGTTATCATGGTACCGATGCT..................................................................................................... 23 0 1 4.00 4 0 4
.............................................................................................................ATACAGTACTGTGATAACTGA................................................................... 21 1 2 4.00 8 8 0
.............................................................................................................GTACAGTACTGTGATAACTGT................................................................... 21 1 2 3.50 7 0 7
...............................................................................................................ACAGTACTGTGATAACTGA................................................................... 19 0 2 3.50 7 7 0
..............................................................................................................TACAGTACTGTGATAACT..................................................................... 18 0 2 3.00 6 6 0
..............................................................................................................TACAGTACTGTGATAACTGAAGA................................................................ 23 0 1 3.00 3 3 0
..............................................................................................................TACAGTACTGTGATAACTGAAGT................................................................ 23 1 2 3.00 6 1 5
...............................................................................................................ACAGTACTGTGATAGCTGA................................................................... 19 1 3 2.67 8 0 8
.............................................................................................................GTACAGTACTGTGATAACTGAA.................................................................. 22 0 2 2.50 5 1 4
.............................................................................................................ATACAGTACTGTGATAACTGAA.................................................................. 22 1 2 2.00 4 4 0
..............................................................................................................TACAGTACTGTGATAACTGAAA................................................................. 22 1 2 2.00 4 0 4
.........................................................................TCGGTTATCATGGTACTGAT........................................................................................................ 20 1 1 2.00 2 0 2
.............................................................................................................GTACAGTACTGTGATAGCTG.................................................................... 20 1 2 2.00 4 0 4
.............................................................................................................ATACAGTACTGTGATAACT..................................................................... 19 1 2 2.00 4 4 0
...............................................................................................................ACAGTACTGTGATAACTGAC.................................................................. 20 1 3 1.67 5 0 5
..............................................................................................................TACAGTACTGTGATAGCTGAA.................................................................. 21 1 2 1.50 3 0 3
..............................................................................................................TACAGTACTGTGATAACTGAC.................................................................. 21 1 2 1.50 3 0 3
.............................................................................................................GTACAGTACTGTGATAGCT..................................................................... 19 1 2 1.50 3 0 3
.............................................................................................................GTACAGTACTGTGATAACTGAAAAATCGTA.......................................................... 30 3 1 1.00 1 1 0
...............................................................................................................ACAGTACTGTGATAACTGAAGAAA.............................................................. 24 1 1 1.00 1 1 0
.........................................................................TCGGTTATCATGGTACCGATGCTT.................................................................................................... 24 1 1 1.00 1 0 1
................................................................................................................CAGTACTGTGATAACTGA................................................................... 18 0 2 1.00 2 2 0
..............................................................................................................TACAGTACTGTGATAGCTGAAG................................................................. 22 1 2 1.00 2 0 2
.................................................................................................................AGTACTGTGATAACTGA................................................................... 17 0 2 1.00 2 1 1
..............................................................................................................TACAGTACTGTGATAGCTG.................................................................... 19 1 3 0.67 2 0 2
...................................................................................................................TACTGTGATAACTGAAG................................................................. 17 0 3 0.67 2 0 2
...............................................................................................................ACAGTACTGTGATAACTGAAGT................................................................ 22 1 2 0.50 1 1 0
...............................................................................................................ACAGTACTGTGATAACTGAAG................................................................. 21 0 2 0.50 1 1 0
.............................................................................................................GGACAGTACTGTGATAACTGA................................................................... 21 1 2 0.50 1 1 0
................................................................................................................CAGTACTGTGATAACTGAAT................................................................. 20 1 2 0.50 1 0 1
..............................................................................................................TACAGTACTGGGATAACTGA................................................................... 20 1 2 0.50 1 0 1
.................................................................................................................AGTACTGTGATAACTGAAG................................................................. 19 0 2 0.50 1 0 1
................................................................................................................CAGTACTGTGATAACTGAAGT................................................................ 21 1 2 0.50 1 0 1
.............................................................................................................GTACCGTACTGTGATAACTGA................................................................... 21 1 2 0.50 1 0 1
..............................................................................................................TACAGTACTGTGATAACTGACC................................................................. 22 2 2 0.50 1 0 1
.............................................................................................................GTACAGTCCTGTGATAACTG.................................................................... 20 1 2 0.50 1 1 0
...........................................................................................................AAGTACAGTACTGTGATAACTG.................................................................... 22 1 2 0.50 1 1 0
.............................................................................................................GTACAGAACTGTGATAACTGA................................................................... 21 1 2 0.50 1 1 0
............................................................................................................AGTACAGTACTGTGATAACTGAA.................................................................. 23 1 2 0.50 1 1 0
.............................................................................................................ATACAGTACTGTGATAACTG.................................................................... 20 1 2 0.50 1 1 0
...............................................................................................................ACAGTACTGTGATAACTGAAT................................................................. 21 1 2 0.50 1 0 1
.............................................................................................................GTACAGTACTGTGGTAACTG.................................................................... 20 1 2 0.50 1 1 0
...............................................................................................................ACAGTACTGTGATAACTGAT.................................................................. 20 1 2 0.50 1 0 1
............................................................................................................AGTACAGTACTGTGATAACTGA................................................................... 22 1 2 0.50 1 1 0
.............................................................................................................GTACAGTACTGTGATACCTGA................................................................... 21 1 2 0.50 1 1 0
..........................................................................................................ACCGTACAGTACTGTGATAACTGA................................................................... 24 2 2 0.50 1 1 0
............................................................................................................AGTACAGTACTGTGATAACTG.................................................................... 21 1 2 0.50 1 1 0
...............................................................................................................ACAGTACTGTGATAACTG.................................................................... 18 0 2 0.50 1 1 0
.............................................................................................................GTACAGTACTGGGATAACTG.................................................................... 20 1 2 0.50 1 1 0
............................................................................................................AGTACAGTACTGTGATAACT..................................................................... 20 1 2 0.50 1 1 0
.............................................................................................................GTAAAGTACTGTGATAACTG.................................................................... 20 1 2 0.50 1 1 0
..............................................................................................................TACAGTACTCTGATAACTGA................................................................... 20 1 3 0.33 1 1 0
..............................................................................................................TACAGAACTGTGATAACTGA................................................................... 20 1 3 0.33 1 0 1
.................................................................................................................AGTACTGTGATAACTG.................................................................... 16 0 4 0.25 1 1 0
.............................................................................................................GTACATTACTGTGATAACT..................................................................... 19 1 4 0.25 1 1 0
..............................................................................................................TACAGTACTGTGATAAATG.................................................................... 19 1 5 0.20 1 1 0
..................................................................................................................GTACTGTGATAACTGAAT................................................................. 18 1 10 0.20 2 0 2
..............................................................................................................TACAGTACTGTGATAGCTGAT.................................................................. 21 2 5 0.20 1 0 1
..............................................................................................................CACAGTACTGTGATAACTG.................................................................... 19 1 5 0.20 1 1 0
.................................................................................................................AGTACTGTGATAACTGAT.................................................................. 18 1 8 0.13 1 0 1

Anti-sense strand reads

GGCACTAGTAGACACCCACCACTCGACCCACCCTCCTTCATGAGTCGATCTATACTCTGACTTGACAGGAAAAAGCCAATAGTACCATGGCTACGACATATAGACTTTCCATGTCATGACACTATTGACTTCTTACCACCACGGTAGTGTAACTCTTTCCCTGTTCCGCACACCACGTCGTCACATCGATACTCGGT
****************************************************....((((.((((((((((((((((((((......(((((((.........))))))))))))))))))))))))).))))))....********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:26 AM