ID:

ocu-mir-101a

 Coordinate:

chr13:101340525-101340607 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.9
mature
  1. chr1:49384673-49384692 -
  2. chr13:101340575-101340594 +
star

Sense Strand Reads

AGTCCTGCACCCGCCCCAAAAGGATGCTGCTGCCCCACCTGGTGACTGACGGGCTGCCCTGGCTCAGTTATCACAGTGCTGATGCTGTCCATTCTAAAGGTACAGTACTGTGATAACTGAAGGATGGCAGCCATCTTGCCGCCTTCCGTCCGAGGAGCCGCCTGGTTCCCCAGAAGAGAGGAA
*************************************************..(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....)))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
....................................................................................................TACAGTACTGTGATAACTGA............................................................... 20 0 2 72.00 144 103 41
...................................................................................................GTACAGTACTGTGATAACTGA............................................................... 21 0 2 37.00 74 50 24
...................................................................................................GTACAGTACTGTGATAACTG................................................................ 20 0 2 27.50 55 51 4
....................................................................................................TACAGTACTGTGATAACTGAAT............................................................. 22 1 2 26.00 52 0 52
...................................................................................................GTACAGTACTGTGATAACT................................................................. 19 0 2 19.00 38 31 7
....................................................................................................TACAGTACTGTGATAACTGAA.............................................................. 21 0 2 16.00 32 25 7
....................................................................................................TACAGTACTGTGATAACTG................................................................ 19 0 2 12.00 24 16 8
................................................................CAGTTATCACAGTGCTGAT.................................................................................................... 19 0 1 8.00 8 0 8
...................................................................................................GTACAGTACTGTGATAGCTGA............................................................... 21 1 2 7.50 15 0 15
................................................................CAGTTATCACAGTGCTGATGCTG................................................................................................ 23 0 1 7.00 7 0 7
....................................................................................................TACAGTACTGTGATAGCTGA............................................................... 20 1 2 6.50 13 0 13
...................................................................................................GTACAGTACTGTGATAACTGAT.............................................................. 22 1 2 5.50 11 0 11
..................................................................GTTATCACAGTGCTGATGC.................................................................................................. 19 0 1 5.00 5 0 5
....................................................................................................TACAGTACTGTGATAACTGAAG............................................................. 22 0 2 5.00 10 3 7
....................................................................................................TACAGTACTGTGATAACTGAT.............................................................. 21 1 2 4.50 9 0 9
................................................................CAGTTATCACAGTGCTGATGCTGTCCAT........................................................................................... 28 0 1 4.00 4 0 4
...................................................................................................ATACAGTACTGTGATAACTGA............................................................... 21 1 2 4.00 8 8 0
.....................................................................................................ACAGTACTGTGATAACTGA............................................................... 19 0 2 3.50 7 7 0
...................................................................................................GTACAGTACTGTGATAACTGT............................................................... 21 1 2 3.50 7 0 7
....................................................................................................TACAGTACTGTGATAACTGAAGT............................................................ 23 1 2 3.00 6 1 5
....................................................................................................TACAGTACTGTGATAACT................................................................. 18 0 2 3.00 6 6 0
.....................................................................................................ACAGTACTGTGATAGCTGA............................................................... 19 1 3 2.67 8 0 8
...................................................................................................GTACAGTACTGTGATAACTGAA.............................................................. 22 0 2 2.50 5 1 4
...............................................................TCAGTTATCACAGTGCTGATGCTG................................................................................................ 24 0 1 2.00 2 0 2
...................................................................................................ATACAGTACTGTGATAACTGAA.............................................................. 22 1 2 2.00 4 4 0
................................................................CAGTTATCACAGTGCTGATGCTGTC.............................................................................................. 25 0 1 2.00 2 0 2
...............................................................TCAGTTATCACAGTGCTGATGCT................................................................................................. 23 0 1 2.00 2 0 2
....................................................................................................TACAGTACTGTGATAACTGAAA............................................................. 22 1 2 2.00 4 0 4
...................................................................................................ATACAGTACTGTGATAACT................................................................. 19 1 2 2.00 4 4 0
...................................................................................................GTACAGTACTGTGATAGCTG................................................................ 20 1 2 2.00 4 0 4
................................................................CAGTTATCACAGTGCTGATGCT................................................................................................. 22 0 1 2.00 2 0 2
...............................................................TCAGTCATCACAGTGCTGAT.................................................................................................... 20 1 1 2.00 2 0 2
.....................................................................................................ACAGTACTGTGATAACTGAC.............................................................. 20 1 3 1.67 5 0 5
....................................................................................................TACAGTACTGTGATAGCTGAA.............................................................. 21 1 2 1.50 3 0 3
....................................................................................................TACAGTACTGTGATAACTGAC.............................................................. 21 1 2 1.50 3 0 3
...................................................................................................GTACAGTACTGTGATAGCT................................................................. 19 1 2 1.50 3 0 3
.................................................................AGTTATCACAGTGCTGATGCTGTCC............................................................................................. 25 0 1 1.00 1 0 1
.......................................................................................................AGTACTGTGATAACTGA............................................................... 17 0 2 1.00 2 1 1
................................................................CAGTTATCACAGTGCTGATGCTGT............................................................................................... 24 0 1 1.00 1 0 1
...............................................................TCAGTTATCACAGTGCTGAT.................................................................................................... 20 0 1 1.00 1 0 1
................................................................CAGTTATCACAGTGCTGATG................................................................................................... 20 0 1 1.00 1 0 1
....................................................................................................TACAGTACTGTGATAGCTGAAG............................................................. 22 1 2 1.00 2 0 2
......................................................................................................CAGTACTGTGATAACTGA............................................................... 18 0 2 1.00 2 2 0
.........................................................................................................TACTGTGATAACTGAAG............................................................. 17 0 3 0.67 2 0 2
....................................................................................................TACAGTACTGTGATAGCTG................................................................ 19 1 3 0.67 2 0 2
....................................................................................................TACAGTACTGGGATAACTGA............................................................... 20 1 2 0.50 1 0 1
.....................................................................................................ACAGTACTGTGATAACTGAAG............................................................. 21 0 2 0.50 1 1 0
...................................................................................................GGACAGTACTGTGATAACTGA............................................................... 21 1 2 0.50 1 1 0
.....................................................................................................ACAGTACTGTGATAACTGAAT............................................................. 21 1 2 0.50 1 0 1
.................................................................................................AAGTACAGTACTGTGATAACTG................................................................ 22 1 2 0.50 1 1 0
..................................................................................................AGTACAGTACTGTGATAACT................................................................. 20 1 2 0.50 1 1 0
...................................................................................................GTACAGAACTGTGATAACTGA............................................................... 21 1 2 0.50 1 1 0
...................................................................................................GTACAGTACTGGGATAACTG................................................................ 20 1 2 0.50 1 1 0
................................................................................................ACCGTACAGTACTGTGATAACTGA............................................................... 24 2 2 0.50 1 1 0
....................................................................................................TACAGTACTGTGATAACTGACC............................................................. 22 2 2 0.50 1 0 1
..................................................................................................AGTACAGTACTGTGATAACTGAA.............................................................. 23 1 2 0.50 1 1 0
......................................................................................................CAGTACTGTGATAACTGAAGT............................................................ 21 1 2 0.50 1 0 1
...................................................................................................GTACAGTACTGTGGTAACTG................................................................ 20 1 2 0.50 1 1 0
.......................................................................................................AGTACTGTGATAACTGAAG............................................................. 19 0 2 0.50 1 0 1
...................................................................................................GTACAGTACTGTGATACCTGA............................................................... 21 1 2 0.50 1 1 0
...................................................................................................GTAAAGTACTGTGATAACTG................................................................ 20 1 2 0.50 1 1 0
.....................................................................................................ACAGTACTGTGATAACTG................................................................ 18 0 2 0.50 1 1 0
..................................................................................................AGTACAGTACTGTGATAACTG................................................................ 21 1 2 0.50 1 1 0
...................................................................................................GTACAGTCCTGTGATAACTG................................................................ 20 1 2 0.50 1 1 0
...................................................................................................GTACCGTACTGTGATAACTGA............................................................... 21 1 2 0.50 1 0 1
......................................................................................................CAGTACTGTGATAACTGAAT............................................................. 20 1 2 0.50 1 0 1
..................................................................................................AGTACAGTACTGTGATAACTGA............................................................... 22 1 2 0.50 1 1 0
...................................................................................................ATACAGTACTGTGATAACTG................................................................ 20 1 2 0.50 1 1 0
.....................................................................................................ACAGTACTGTGATAACTGAT.............................................................. 20 1 2 0.50 1 0 1
.....................................................................................................ACAGTACTGTGATAACTGAAGT............................................................ 22 1 2 0.50 1 1 0
....................................................................................................TACAGAACTGTGATAACTGA............................................................... 20 1 3 0.33 1 0 1
....................................................................................................TACAGTACTCTGATAACTGA............................................................... 20 1 3 0.33 1 1 0
...................................................................................................GTACATTACTGTGATAACT................................................................. 19 1 4 0.25 1 1 0
.......................................................................................................AGTACTGTGATAACTG................................................................ 16 0 4 0.25 1 1 0
........................................................................................................GTACTGTGATAACTGAAT............................................................. 18 1 10 0.20 2 0 2
....................................................................................................CACAGTACTGTGATAACTG................................................................ 19 1 5 0.20 1 1 0
....................................................................................................TACAGTACTGTGATAAATG................................................................ 19 1 5 0.20 1 1 0
....................................................................................................TACAGTACTGTGATAGCTGAT.............................................................. 21 2 5 0.20 1 0 1
.......................................................................................................AGTACTGTGATAACTGAT.............................................................. 18 1 8 0.13 1 0 1

Anti-sense strand reads

TCAGGACGTGGGCGGGGTTTTCCTACGACGACGGGGTGGACCACTGACTGCCCGACGGGACCGAGTCAATAGTGTCACGACTACGACAGGTAAGATTTCCATGTCATGACACTATTGACTTCCTACCGTCGGTAGAACGGCGGAAGGCAGGCTCCTCGGCGGACCAAGGGGTCTTCTCTCCTT
************************************************..(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....)))))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:32 AM