ID:

ocu-mir-100

 Coordinate:

chr1:95869528-95869607 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.0 -31.9 -31.3

Sense Strand Reads

AACATTTTGTTTTCAGACATGTCAAACCCCCAAACGAGAGAAGACCAAGGCCTGTTGCCACAAACCCGTAGATCCGAACTTGTGGTGATAGTCCACACAAGCTTGCGTCTATAGGTCTGTGTCTGTTAGGCAATCGCACAACCCGCGGGCTCTGCCTGTTTGCCACTCAATAGATAGCCC
***********************************************..(((((....((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).....)))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
..............................................................AACCCGTAGATCCGAACTTGT................................................................................................. 21 0 1 98.00 98 62 36
..............................................................AACCCGTAGATCCGAACTTG.................................................................................................. 20 0 1 70.00 70 45 25
..............................................................AACCCGTAGATCCGAACTT................................................................................................... 19 0 1 24.00 24 22 2
..............................................................AACCCGTAGATCCGAACTTGTG................................................................................................ 22 0 1 21.00 21 6 15
..............................................................AACCCGTAGATCCGAACTTGTGT............................................................................................... 23 1 1 10.00 10 0 10
................................................................................................ACAAGCTTGTGTCTATAGGT................................................................ 20 1 1 7.00 7 0 7
...............................................................ACCCGTAGATCCGAACTTGT................................................................................................. 20 0 1 6.00 6 1 5
.............................................................AAACCCGTAGATCCGAACTTGT................................................................................................. 22 0 1 6.00 6 0 6
...............................................................ACCCGTAGATCCGAACTTG.................................................................................................. 19 0 1 6.00 6 2 4
.................................................................................................CAAGCTTGCGTCTATAGGTCTG............................................................. 22 0 1 4.00 4 0 4
..............................................................AACCCGTAAATCCGAACTTGTG................................................................................................ 22 1 1 4.00 4 4 0
..............................................................CACCCGTAGAACCGACCTTG.................................................................................................. 20 3 20 2.65 53 18 35
...............................................................ACCCGTAGAACCGACCTTG.................................................................................................. 19 2 2 2.50 5 0 5
...............................................................................................AACAAGCTTGCGTCTATAGGTCT.............................................................. 23 1 1 2.00 2 0 2
..............................................................GACCCGTAGATCCGAACTTGT................................................................................................. 21 1 1 2.00 2 2 0
..............................................................GACCCGTAGATCCGAACTTGTGT............................................................................................... 23 2 1 2.00 2 0 2
..............................................................AACCCGTAGATCCGAACTTGTA................................................................................................ 22 1 1 1.00 1 0 1
.................................................................CCGTAGATCCGAACTTGTG................................................................................................ 19 0 1 1.00 1 0 1
.................................................................CCGTAGATCCGAACTTGT................................................................................................. 18 0 1 1.00 1 1 0
..............................................................CACCCGTAGATCCGAACTTGT................................................................................................. 21 1 1 1.00 1 1 0
.............................................................AAACCCGTAGATCCGAACTTG.................................................................................................. 21 0 1 1.00 1 1 0
..............................................................AACCCGTAGATCCGAACTTGTTG............................................................................................... 23 1 1 1.00 1 1 0
...............................................................ACCCGTAGATCCGAAATTG.................................................................................................. 19 1 1 1.00 1 0 1
..............................................................GACCCGTAGATCCGAACTT................................................................................................... 19 1 1 1.00 1 1 0
.................................................................................................CAAGCTTGCGTCTATAGGT................................................................ 19 0 1 1.00 1 1 0
................................................................................................ACAAGCTTGCGTCTATAGGT................................................................ 20 0 1 1.00 1 1 0
..............................................................AACCCGTAGATCCGACCTTGT................................................................................................. 21 1 2 1.00 2 1 1
..............................................................TACCCGTAGATCCGAACTT................................................................................................... 19 1 1 1.00 1 1 0
..............................................................AACCCGTGGATCCGAACTTGT................................................................................................. 21 1 1 1.00 1 0 1
..............................................................AACCCGTAGATCCGAACTTGTGAA.............................................................................................. 24 2 1 1.00 1 0 1
..............................................................AACCCGTAGATCCGAACTTGTGA............................................................................................... 23 1 1 1.00 1 1 0
.......................................................................................................................TGTCTGTTAGGCAATCGCACAACCCGCGGGCTC............................ 33 0 1 1.00 1 1 0
..............................................................AACCCGTAGACCCGAACTTG.................................................................................................. 20 1 1 1.00 1 1 0
..............................................................AACCCGTAGATCCGAACTTGC................................................................................................. 21 1 1 1.00 1 1 0
...............................................................ACCCGTAGAACCGACCTTGCG................................................................................................ 21 3 2 1.00 2 0 2
...............................................................ACCCGTAGATCCGCACTTGT................................................................................................. 20 1 1 1.00 1 0 1
..............................................................AACCCGTAGATCCGAAC..................................................................................................... 17 0 1 1.00 1 1 0
..............................................................AACCCGTAGATCCGAGCTT................................................................................................... 19 1 2 0.50 1 1 0
..............................................................AACCCGTAGATCCGA....................................................................................................... 15 0 2 0.50 1 0 1
.............................................................ACACCCGTAGAACCGACCTTG.................................................................................................. 21 3 6 0.33 2 0 2
...............................................................ACCCGTAGAACCGACCTT................................................................................................... 18 2 4 0.25 1 1 0
..............................................................AACCCGTAGAACCGACCTTGC................................................................................................. 21 3 4 0.25 1 0 1
........................................AAGACCAAGGCCTGT............................................................................................................................. 15 0 6 0.17 1 0 1
.................................................................CCGTAGAACCGACCTTGCG................................................................................................ 19 3 20 0.10 2 0 2

Anti-sense strand reads

TTGTAAAACAAAAGTCTGTACAGTTTGGGGGTTTGCTCTCTTCTGGTTCCGGACAACGGTGTTTGGGCATCTAGGCTTGAACACCACTATCAGGTGTGTTCGAACGCAGATATCCAGACACAGACAATCCGTTAGCGTGTTGGGCGCCCGAGACGGACAAACGGTGAGTTATCTATCGGG
**********************************************..(((((....((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).....)))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:27 AM