ID:

ocu-let-7i

 Coordinate:

chr4:41563449-41563533 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-53.1 -52.9 -52.9

Sense Strand Reads

CGCCGCCCGGCCGCCTTCCGCGTGGTCCGGCGGCTCCCGACACCATGGCCCTGGCTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACATTGCCCGCTGTGGAGATAACTGCGCAAGCTACTGCCTTGCTAGTGCTGGTGATGCTCAGCGCCGCCGAGGAGGAGGACAATGGCTGGGAATTC
****************************************(((((..((.(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))).))))))).....************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.......................................................TGAGGTAGTAGTTTGTGCTGTT............................................................................................................ 22 0 1 299.00 299 250 49
.......................................................TGAGGTAGTAGTTTGTGCTGT............................................................................................................. 21 0 1 272.00 272 183 89
.......................................................TGAGGTAGTAGTTTGTGCTG.............................................................................................................. 20 0 1 118.00 118 100 18
.......................................................TGAGGTAGTAGTTTGTGCTGTTT........................................................................................................... 23 1 1 80.00 80 79 1
...............................................................................................................CTGCGCAAGCTACTGCCTTGCT.................................................... 22 0 1 49.00 49 49 0
.......................................................TGAGGTAGTAGTTTGTGCTGTTA........................................................................................................... 23 1 1 35.00 35 21 14
.......................................................TGAGGTAGTAGTTTGTGCT............................................................................................................... 19 0 1 20.00 20 15 5
............................................................TAGTAGTTTGTGCTGTT............................................................................................................ 17 0 1 15.00 15 15 0
......................................................ATGAGGTAGTAGTTTGTGCTG.............................................................................................................. 21 1 1 12.00 12 8 4
......................................................ATGAGGTAGTAGTTTGTGCTGT............................................................................................................. 22 1 1 12.00 12 5 7
.......................................................TGAGGTAGTAGTTTGTGC................................................................................................................ 18 0 1 11.00 11 10 1
..........................................................GGTAGTAGTTTGTGCTGTT............................................................................................................ 19 0 1 11.00 11 11 0
...........................................................GTAGTAGTTTGTGCTGTT............................................................................................................ 18 0 1 11.00 11 11 0
........................................................GAGGTAGTAGTTTGTGCTGT............................................................................................................. 20 0 1 11.00 11 7 4
........................................................GAGGTAGTAGTTTGTGCTGTTT........................................................................................................... 22 1 1 7.00 7 7 0
........................................................GAGGTAGTAGTTTGTGCTGTT............................................................................................................ 21 0 1 6.00 6 4 2
........................................................GAGGTAGTAGTTTGTGCTG.............................................................................................................. 19 0 1 5.00 5 1 4
..........................................................GGTAGTAGTTTGTGCTGTTT........................................................................................................... 20 1 1 5.00 5 5 0
.............................................................AGTAGTTTGTGCTGTT............................................................................................................ 16 0 1 5.00 5 5 0
......................................................ATGAGGTAGTAGTTTGTGCTGTT............................................................................................................ 23 1 1 4.00 4 1 3
.......................................................TGAGGGAGTAGTTTGTGCTG.............................................................................................................. 20 1 1 4.00 4 3 1
.......................................................TGAGGTAGTAGTTTGTGCTA.............................................................................................................. 20 1 1 3.00 3 3 0
.........................................................AGGTAGTAGTTTGTGCTGTT............................................................................................................ 20 0 1 3.00 3 1 2
......................................................ATGAGGTAGTAGTTTGTGCTGTTA........................................................................................................... 24 2 1 3.00 3 0 3
................................................................................................................TGCGCAAGCTACTGCCTTGCT.................................................... 21 0 1 3.00 3 3 0
.......................................................TGAGGTAGTAGTTTGTGCTGTTAT.......................................................................................................... 24 2 1 3.00 3 3 0
...............................................................................................................CTGCGCAAGCTACTGCCTTGCTTTT................................................. 25 2 1 3.00 3 3 0
.......................................................TGAGGCAGTAGTTTGTGCTGTT............................................................................................................ 22 1 1 3.00 3 3 0
.......................................................TGAGGGAGTAGTTTGTGCTGT............................................................................................................. 21 1 1 3.00 3 3 0
..............................................................GTAGTTTGTGCTGTT............................................................................................................ 15 0 4 3.00 12 12 0
....................................................TGATGAGGTAGTAGTTTGTGCTGT............................................................................................................. 24 2 1 3.00 3 3 0
...............................................................................................................CTGCGCAAGCTACTGCCTTGC..................................................... 21 0 1 3.00 3 3 0
.......................................................TGAGGTAGTAGTTTGTGCTGTA............................................................................................................ 22 1 1 3.00 3 2 1
................................................................................................................TGCGCAAGCTACTGCCTTGCTT................................................... 22 1 1 2.00 2 2 0
.......................................................TGAGGTAGTAGTTTGTGCTGTTTT.......................................................................................................... 24 2 1 2.00 2 1 1
......................................................ATGAGGTAGTAGTTTGTGCTGTTT........................................................................................................... 24 2 1 2.00 2 2 0
...............................................................................................................CTGCGCAAGCTACTGCCTTGCTT................................................... 23 1 1 2.00 2 2 0
.......................................................TGAGGTAGTGGTTTGTGCTGT............................................................................................................. 21 1 1 2.00 2 1 1
.......................................................TGAGGTAGTAGTTTGTGCTGTTAA.......................................................................................................... 24 2 2 2.00 4 1 3
...........................................................................................................AAAACTGCGCAAGCTACTGCCTTGCT.................................................... 26 1 1 2.00 2 2 0
.......................................................TGAGGTAGGAGTTTGTGCTG.............................................................................................................. 20 1 1 2.00 2 2 0
.......................................................TGAGGTAGTCGTTTGTGCTGT............................................................................................................. 21 1 1 2.00 2 2 0
.......................................................TGAGGCAGTAGTTTGTGCTGT............................................................................................................. 21 1 1 2.00 2 2 0
.......................................................TGAGGTAGTAGTTTGTGCTGTTTTT......................................................................................................... 25 2 1 2.00 2 1 1
.................................................................................................................GCGCAAGCTACTGCCTTGCT.................................................... 20 0 1 2.00 2 2 0
.......................................................TGAGGTAGTAGTTTGT.................................................................................................................. 16 0 3 1.33 4 4 0
............................................................TAGTAGTTTGTGCTGTTT........................................................................................................... 18 1 7 1.14 8 8 0
.......................................................TGAGGAAGTAGTTTGTGCTGTT............................................................................................................ 22 1 1 1.00 1 1 0
.......................................................TGAGGTAGTTGTTTGTGCTGTT............................................................................................................ 22 1 1 1.00 1 1 0
..................................................CGGAATGAGGTAGTAGTTTGTGCTG.............................................................................................................. 25 3 1 1.00 1 0 1
...............................................................................................................CTGCGCAAGCTACTGCCTTGCC.................................................... 22 1 1 1.00 1 1 0
.......................................................GGAGGTAGTAGTTTGTGCTGTT............................................................................................................ 22 1 1 1.00 1 1 0
.......................................................TGCGGTAGTAGTTTGTGCTG.............................................................................................................. 20 1 1 1.00 1 1 0
.......................................................TGAGGTAGTAGTTTGTGCTGA............................................................................................................. 21 1 1 1.00 1 0 1
.........................................................AGGTAGTAGTTTGTGCTGTTT........................................................................................................... 21 1 1 1.00 1 1 0
.......................................................TGAGGTAGTAGTTTGTGCTGTTTA.......................................................................................................... 24 2 1 1.00 1 1 0
..................................................CGGAATGAGGTAGTAGTTTGTGCTGTT............................................................................................................ 27 3 1 1.00 1 0 1
.............................................................................GGTCGGGTTGTGACATTGCCCGCTGTGGAGATAA.......................................................................... 34 0 1 1.00 1 1 0
.......................................................TGAGTTAGTAGTTTGTGCTGTTA........................................................................................................... 23 2 1 1.00 1 0 1
.......................................................TGAGGTAGTAGTTAGTGCTGT............................................................................................................. 21 1 1 1.00 1 1 0
.......................................................TGAGGGAGTAGTTTGTGCTGTTA........................................................................................................... 23 2 1 1.00 1 1 0
.......................................................TGAGGGAGTAGTTTGTGCTGTT............................................................................................................ 22 1 1 1.00 1 1 0
.......................................................TGAGGTAGTAGTTTGTGCTGTTAC.......................................................................................................... 24 2 1 1.00 1 1 0
.......................................................TGAGGTAGCAGTTTGTGCTG.............................................................................................................. 20 1 1 1.00 1 1 0
.......................................................TGAGGTAGTCGTTTGTGCTGTT............................................................................................................ 22 1 1 1.00 1 0 1
.......................................................TGAGGTAGTCGTTTGTGCTGTTT........................................................................................................... 23 2 1 1.00 1 1 0
.......................................................TGAGGTAGTAGTTTGTGCTGTAT........................................................................................................... 23 2 1 1.00 1 1 0
.......................................................TGAGGTAGTAGTTTGTGCTGTAA........................................................................................................... 23 2 1 1.00 1 0 1
...............................................................................................................CTGCGCAAGCTACTGCCTTGTT.................................................... 22 1 1 1.00 1 1 0
.......................................................TGAGGTAGTAGTTTGTGCTGAT............................................................................................................ 22 1 1 1.00 1 1 0
...............................................................................................................CTGCGCAAGCTACTGCCTTGAT.................................................... 22 1 1 1.00 1 1 0
.......................................................TGAGGTAGTAGTTTGTGCTGTTATTT........................................................................................................ 26 3 1 1.00 1 1 0
..........................................................GGTAGTAGTTTGTGCTG.............................................................................................................. 17 0 1 1.00 1 0 1
.......................................................TGAGGTAGTAGTTTGTGCTGTTG........................................................................................................... 23 0 1 1.00 1 1 0
.......................................................TGAGGTAGTAGTTTGTGCTAT............................................................................................................. 21 1 1 1.00 1 1 0
........................................................GAGGTAGTAGTTTGTGCTGTAA........................................................................................................... 22 2 1 1.00 1 0 1
..........................................................GGTAGTAGTTTGTGCTGTTTGA......................................................................................................... 22 2 2 1.00 2 2 0
.......................................................TGAGGTAGTGGTTTGTGCTGTT............................................................................................................ 22 1 1 1.00 1 1 0
...............................................................................................................CTGCGCAAGCTACTGCC......................................................... 17 0 1 1.00 1 0 1
.......................................................TGAGGTAGTCGTTTGTGCTG.............................................................................................................. 20 1 1 1.00 1 1 0
.........................................................AGGTAGTAGTTTGTGCTT.............................................................................................................. 18 1 5 0.60 3 3 0
.......................................................TGAGGCAGTAGTTTGTGCTG.............................................................................................................. 20 1 2 0.50 1 1 0
.......................................................TGAGGTAGTAGTTTGTTCTGT............................................................................................................. 21 1 2 0.50 1 1 0
.......................................................TGAGGAAGTAGTTTGTGCTG.............................................................................................................. 20 1 2 0.50 1 1 0
......................................................ATGAGGTAGTGGTTTGTGCTGT............................................................................................................. 22 2 2 0.50 1 0 1
....................................................AAATGAGGTAGTAGTTTGTGCTGT............................................................................................................. 24 3 2 0.50 1 1 0
........................................................GAGGAAGTAGTTTGTGCTGTT............................................................................................................ 21 1 2 0.50 1 1 0
........................................................GAGGTCGTAGTTTGTGCTGTTTA.......................................................................................................... 23 3 2 0.50 1 0 1
.......................................................TGAGGTAGTAGTTTGTCCTGTTT........................................................................................................... 23 2 2 0.50 1 1 0
.......................................................TGAGGTAGTAGTTTGTGCTGTTAAA......................................................................................................... 25 3 2 0.50 1 0 1
...........................................................GTAGTAGATTGTGCTGTT............................................................................................................ 18 1 3 0.33 1 1 0
.......................................................TGAGGTAGTAGTTTGTGT................................................................................................................ 18 1 6 0.33 2 2 0
.........................................................AGGAAGTAGTTTGTGCTGTT............................................................................................................ 20 1 3 0.33 1 1 0
........................................................GAGGAAGTAGTTTGTGCTG.............................................................................................................. 19 1 4 0.25 1 1 0
.......................................................TGAGGAAGTAGTTTTTGCTGTT............................................................................................................ 22 2 4 0.25 1 1 0
.......................................................TGAGGTAGTAATTTGTGCAGTT............................................................................................................ 22 2 4 0.25 1 1 0
.............................................................AGTAGTTTGTGCTGT............................................................................................................. 15 0 6 0.17 1 1 0
...........................................................GTAGTAGTTTGTGCTGTTTT.......................................................................................................... 20 2 20 0.15 3 3 0
.....................................................TTTGAGGTAGTAGTTTGTGC................................................................................................................ 20 2 7 0.14 1 1 0
...........................................................GTAGTAGTTTGTGCTGTTAAT......................................................................................................... 21 2 10 0.10 1 1 0
..........................................................GGGAGTAGTTTGTGCTGTTTGA......................................................................................................... 22 3 20 0.05 1 1 0

Anti-sense strand reads

GCGGCGGGCCGGCGGAAGGCGCACCAGGCCGCCGAGGGCTGTGGTACCGGGACCGACTCCATCATCAAACACGACAACCAGCCCAACACTGTAACGGGCGACACCTCTATTGACGCGTTCGATGACGGAACGATCACGACCACTACGAGTCGCGGCGGCTCCTCCTCCTGTTACCGACCCTTAAG
*************************************(((((..((.(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))).))))))).....**************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes
....................GCACCAGGCCGCCGA...................................................................................................................................................... 15 0 1 2.00 2 2

Generated: 05/16/2015 at 12:45 AM