ID:

ocu-let-7g

 Coordinate:

chr9:19340303-19340390 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.1 -49.8 -49.6

Sense Strand Reads

AAGTGCATACTGAAGAGTTCCTCCAGCGCTCCGTTTCCTTTTGCCTGATTCCAGGCTGAGGTAGTAGTTTGTACAGTTTGAGGGTCTATGATACCACCCGGTACAGGAGATAACTGTACAGGCCACTGCCTTGCCAGGAACAGTGCGACAGCTACCAAGTGGGGTGGAGAGGATGGCGACGCCCTGCT
*****************************************((((((.((((.(((.((((((((.((((((((((((.....((((.((.((((....))))))..)))))))))))))))).))))))))))).))))))).)))..*************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
........................................................TGAGGTAGTAGTTTGTACAG................................................................................................................ 20 0 1 229.00 229 148 81
........................................................TGAGGTAGTAGTTTGTACAGTT.............................................................................................................. 22 0 1 117.00 117 83 34
........................................................TGAGGTAGTAGTTTGTACAGT............................................................................................................... 21 0 1 105.00 105 54 51
........................................................TGAGGTAGTAGTTTGTACA................................................................................................................. 19 0 1 52.00 52 39 13
.........................................................GAGGTAGTAGTTTGTACAG................................................................................................................ 19 0 1 15.00 15 8 7
.................................................................................................................CTGTACAGGCCACTGCCTTGCT..................................................... 22 1 1 12.00 12 12 0
........................................................TGAGGTAGTAGTTTGTAC.................................................................................................................. 18 0 1 11.00 11 7 4
.......................................................ATGAGGTAGTAGTTTGTACAG................................................................................................................ 21 1 1 10.00 10 2 8
.........................................................GAGGTAGTAGTTTGTACAGTT.............................................................................................................. 21 0 1 10.00 10 5 5
.........................................................GAGGTAGTAGTTTGTACAGT............................................................................................................... 20 0 1 7.00 7 4 3
............................................................GTAGTAGTTTGTACAGTT.............................................................................................................. 18 0 1 6.00 6 6 0
..............................................................AGTAGTTTGTACAGTTTGAGGT........................................................................................................ 22 1 1 5.00 5 5 0
.......................................................ATGAGGTAGTAGTTTGTACAGTT.............................................................................................................. 23 1 1 5.00 5 2 3
........................................................TGATGTAGTAGTTTGTACAG................................................................................................................ 20 1 1 4.00 4 4 0
........................................................TGAGGTAGTAGTTTGTA................................................................................................................... 17 0 1 4.00 4 3 1
...........................................................GGTAGTAGTTTGTACAG................................................................................................................ 17 0 1 4.00 4 0 4
...........................................................GGTAGTAGTTTGTAC.................................................................................................................. 15 0 1 3.00 3 3 0
.............................................................TAGTAGTTTGTACAGTT.............................................................................................................. 17 0 1 3.00 3 3 0
.........................................................GAGGTAGTAGTTTGTAC.................................................................................................................. 17 0 1 3.00 3 3 0
........................................................TGAGGTAGTAGTTTGTACAGTTA............................................................................................................. 23 1 2 2.00 4 0 4
........................................................TGAGGTAGTAGTTTGTACAGTTTGAGGGTCTAT................................................................................................... 33 0 1 2.00 2 0 2
........................................................TGAGGTAGTAGTTTGTACAGTTTG............................................................................................................ 24 0 1 2.00 2 0 2
............................................................GTAGTAGTTTGTACAGT............................................................................................................... 17 0 1 2.00 2 2 0
.........................................................GAGGTAGTAGTTTGTACA................................................................................................................. 18 0 1 2.00 2 1 1
........................................................TGAGGTAGTAGTTTGTACAC................................................................................................................ 20 1 1 2.00 2 2 0
........................................................TGAGGTAGTAGTTTGTACAGTTTA............................................................................................................ 24 1 1 2.00 2 0 2
.....................................................GAATGAGGTAGTAGTTTGTACAG................................................................................................................ 23 2 1 2.00 2 0 2
.................................................................................................................CTGTACAGGCCACTGCCTTGC...................................................... 21 0 1 2.00 2 2 0
.........................................................GAGGTAGTAGTTTGTACAGTTT............................................................................................................. 22 0 1 2.00 2 0 2
..............................................................AGTAGTTTGTACAGTT.............................................................................................................. 16 0 2 1.50 3 3 0
........................................................TGAGGTATTAGTTTGTACAG................................................................................................................ 20 1 2 1.50 3 3 0
........................................................TGAGGTAGTAGTTTGT.................................................................................................................... 16 0 3 1.33 4 4 0
........................................................TGAGGTGGTAGTTTGTACAGT............................................................................................................... 21 1 1 1.00 1 0 1
........................................................TGAGGGAGTAGTTTGTACAGT............................................................................................................... 21 1 1 1.00 1 0 1
.................................................................................................................CTGTAGAGGCCACTGCCTTGC...................................................... 21 1 1 1.00 1 1 0
........................................................TGAGGTAGTAGTTTGTACAGTTTGAGGGT....................................................................................................... 29 0 1 1.00 1 0 1
........................................................TGAGGTAGTAGTTTGTACAGTTTGAGGGTCTATGA................................................................................................. 35 0 1 1.00 1 0 1
....................................................AGTTTGAGGTAGTAGTTTGTAC.................................................................................................................. 22 2 1 1.00 1 1 0
........................................................TGAGGTAGCAGTTTGTACAG................................................................................................................ 20 1 1 1.00 1 0 1
........................................................TGAGGTAGTAGTTTGTACCG................................................................................................................ 20 1 1 1.00 1 0 1
.......................................................ATGAGGTAGTAGTTTGTACAGT............................................................................................................... 22 1 1 1.00 1 0 1
........................................................TGAGGTCGTAGTTTGTACAGTT.............................................................................................................. 22 1 1 1.00 1 0 1
..............................................................AGAAGTTTGTACAGTTTGAGGT........................................................................................................ 22 2 1 1.00 1 1 0
........................................................TGAGGTAGTAGTTTGTACAGTTT............................................................................................................. 23 0 1 1.00 1 0 1
........................................................TGAGGAAGTAGTTTGTACAGTT.............................................................................................................. 22 1 1 1.00 1 1 0
...........................................................GGTAGTAGTTTGTGCTGTTTGA........................................................................................................... 22 2 2 1.00 2 2 0
........................................................TGAGGTAGTAGTTTGTACAGTTTGAGG......................................................................................................... 27 0 1 1.00 1 0 1
........................................................TGAGGTAGTAGTTTGTACAGTTTT............................................................................................................ 24 1 1 1.00 1 0 1
........................................................TGAGGGAGTAGTTTGTACAGTT.............................................................................................................. 22 1 1 1.00 1 1 0
........................................................TGAGGTAGTCGTTTGTACAGT............................................................................................................... 21 1 1 1.00 1 1 0
.................................................................................................................CTGTACAGGCCACTGCCT......................................................... 18 0 1 1.00 1 1 0
...........................................................GGTAGTAGTTTGTACAGT............................................................................................................... 18 0 1 1.00 1 0 1
........................................................TGAGGGAGTAGTTTGTACAG................................................................................................................ 20 1 1 1.00 1 1 0
........................................................TGAGGAAGTAGTTTGTACAG................................................................................................................ 20 1 1 1.00 1 0 1
........................................................TGAGGTAGTAGTTCGTACAGTT.............................................................................................................. 22 1 1 1.00 1 0 1
........................................................TCAGGTAGTAGTTTGTACAG................................................................................................................ 20 1 1 1.00 1 0 1
..............................................................AGGAGTTTGTACAGTTTGAGGT........................................................................................................ 22 2 2 0.50 1 1 0
.......................................................TTGAGGTAGTAGTTTGTACAG................................................................................................................ 21 1 2 0.50 1 0 1
.....................................................AAATGAGGTAGTAGTTTGTACAG................................................................................................................ 23 3 6 0.50 3 3 0
........................................................TGAGGTAGTAGTTTGTCCTGTTT............................................................................................................. 23 2 2 0.50 1 1 0
........................................................TGAGGTAGTGGTTTGTACAGC............................................................................................................... 21 2 2 0.50 1 1 0
.......................................................ATGAGGTAGTAGTTTGTACA................................................................................................................. 20 1 2 0.50 1 0 1
.........................................................GAGGTAGTAGTTTGTACAGTTA............................................................................................................. 22 1 2 0.50 1 0 1
.......................................................ATGAGGTAGTAGTTTGTACAGTTA............................................................................................................. 24 2 2 0.50 1 0 1
........................................................TGAGGTAGGAGTTTGTACAGT............................................................................................................... 21 1 3 0.33 1 1 0
........................................................TGAGGTAGGAGTTTGTACAG................................................................................................................ 20 1 3 0.33 1 1 0
........................................................TGAGGTAGTAGTTTGTACAGTAA............................................................................................................. 23 2 3 0.33 1 0 1
....................................................ACGCTGAGGTAGTAGATTGTATAG................................................................................................................ 24 3 4 0.25 1 0 1
........................................................TGAGGTAGTAATTTGTGCAGTT.............................................................................................................. 22 2 4 0.25 1 1 0
....................................................ACTTTGAGGTAGTAGTTTGTACA................................................................................................................. 23 3 4 0.25 1 0 1
........................................................TGAGGTAGTAGATTGTACAGTTA............................................................................................................. 23 2 4 0.25 1 0 1
........................................................TGAGGTAGTAGGTTGTACAG................................................................................................................ 20 1 5 0.20 1 0 1
.........................................................AAGGTAGTAGTTTGTACA................................................................................................................. 18 1 7 0.14 1 1 0
...................................................CAGTTTGAGGTAGTAGTTTG..................................................................................................................... 20 2 8 0.13 1 1 0
.......................................................CAAAAGTAGTAGTTTGTACAGTT.............................................................................................................. 23 3 20 0.10 2 2 0
...........................................................GGGAGTAGTTTGTGCTGTTTGA........................................................................................................... 22 3 20 0.05 1 1 0

Anti-sense strand reads

TTCACGTATGACTTCTCAAGGAGGTCGCGAGGCAAAGGAAAACGGACTAAGGTCCGACTCCATCATCAAACATGTCAAACTCCCAGATACTATGGTGGGCCATGTCCTCTATTGACATGTCCGGTGACGGAACGGTCCTTGTCACGCTGTCGATGGTTCACCCCACCTCTCCTACCGCTGCGGGACGA
***************************************((((((.((((.(((.((((((((.((((((((((((.....((((.((.((((....))))))..)))))))))))))))).))))))))))).))))))).)))..***************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:50 AM