ID:

ocu-let-7f-2

 Coordinate:

chrX:35040021-35040103 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.3 -47.6 -47.5
mature
  1. chr1:71564253-71564272 +
  2. chrX:35040077-35040096 -
star

Sense Strand Reads

ACCCTTCTGTATAGCTGGCCCATGGGGGCTGAAGATGGACACTGGTACTCTGTGGGATGAGGTAGTAGATTGTATAGTTTTAGGGTCATACCCCATCTTGGAGATAACTATACAGTCTACTGTCTTTCCCACGGTGGTACGCTTCTCTTCTGACTGGCTCAGTTCAGGGTTTTTTTGGTTTTG
******************************************..(((((((((((((.((((((((((((((((((((((((((((........))))))))....)))))))))))))))))))))))))))).)))))..***************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
.........................................................TGAGGTAGTAGATTGTATAG.......................................................................................................... 20 0 2 377.00 754 588 166
.........................................................TGAGGTAGTAGATTGTATAGT......................................................................................................... 21 0 2 121.00 242 194 48
.........................................................TGAGGTAGTAGATTGTATAGTT........................................................................................................ 22 0 2 119.00 238 55 183
........................................................ATGAGGTAGTAGATTGTATAG.......................................................................................................... 21 0 1 56.00 56 44 12
.........................................................TGAGGTAGTAGATTGTATA........................................................................................................... 19 0 2 49.00 98 83 15
.........................................................TGAGGTAGTAGATTGTAT............................................................................................................ 18 0 2 25.00 50 24 26
..........................................................GAGGTAGTAGATTGTATAG.......................................................................................................... 19 0 2 24.50 49 43 6
........................................................ATGAGGTAGTAGATTGTATA........................................................................................................... 20 0 1 22.00 22 16 6
........................................................ATGAGGTAGTAGATTGTATAGT......................................................................................................... 22 0 1 15.00 15 15 0
..........................................................GAGGTAGTAGATTGTATAGT......................................................................................................... 20 0 2 14.00 28 27 1
........................................................ATGAGGTAGTAGATTGTATAGTT........................................................................................................ 23 0 1 7.00 7 2 5
.........................................................TGAGGTAGTAGATTGTATAGTTA....................................................................................................... 23 1 2 5.00 10 9 1
..........................................................GAGGTAGTAGATTGTATAGTT........................................................................................................ 21 0 2 5.00 10 3 7
..........................................................GAGGTAGTAGATTGTATA........................................................................................................... 18 0 2 4.00 8 8 0
........................................................AAGAGGTAGTAGATTGTATAGTTT....................................................................................................... 24 1 1 3.00 3 0 3
...........................................................................................................CTATACAGTCTACTGTCTTTCT...................................................... 22 1 1 3.00 3 0 3
.........................................................TGAGGTAGTAGATTGTATAGTTT....................................................................................................... 23 0 1 3.00 3 1 2
.........................................................TGAGGGAGTAGATTGTATAG.......................................................................................................... 20 1 2 2.50 5 5 0
.......................................................AATGAGGTAGTAGATTGTATAG.......................................................................................................... 22 1 2 2.50 5 5 0
..........................................................GAGGTAGTAGATTGTAT............................................................................................................ 17 0 2 2.00 4 3 1
.........................................................TGAGGCAGTAGATTGTATAG.......................................................................................................... 20 1 2 2.00 4 3 1
...........................................................................................................CTATACAGTCTACTGTCTTT........................................................ 20 0 1 2.00 2 0 2
.........................................................TGAGGAAGTAGATTGTATAG.......................................................................................................... 20 1 2 2.00 4 3 1
.........................................................TGAGGTAGTAGATTGT.............................................................................................................. 16 0 5 1.60 8 5 3
.......................................................AATGAGGTAGTAGATTGTATA........................................................................................................... 21 1 2 1.50 3 3 0
.......................................................AATGAGGTAGTAGATTGTATAGT......................................................................................................... 23 1 2 1.50 3 3 0
...........................................................................................................CTATACAGTCTACTGTCTT......................................................... 19 0 1 1.00 1 0 1
.........................................................TGAGGGAGTAGATTGTATAGT......................................................................................................... 21 1 2 1.00 2 2 0
........................................................ATGAGGTAGTAGATTGTATAGTTTTCGTA.................................................................................................. 29 3 1 1.00 1 1 0
.........................................................TGAGGAAGTAGATTGTATAGTT........................................................................................................ 22 1 2 1.00 2 0 2
.......................................................GCTGAGGTAGTAGATTGTATAG.......................................................................................................... 22 1 1 1.00 1 1 0
....................................................GGGTCTGAGGTAGTAGATTGTATAG.......................................................................................................... 25 3 1 1.00 1 1 0
........................................................ATGAGGTAGGAGATTGTATAG.......................................................................................................... 21 1 1 1.00 1 1 0
.........................................................TGAGGTAGTAGATTGTATAGTTTCCT.................................................................................................... 26 3 2 1.00 2 2 0
...............................................................AGTAGATTGTATAGTTTGAGGT.................................................................................................. 22 2 1 1.00 1 0 1
........................................................ATGAGGTAGTAGATTGTATAGTTTCGGA................................................................................................... 28 3 1 1.00 1 1 0
.........................................................TGAGGTAGTAGATTGTATAGTTTT...................................................................................................... 24 0 1 1.00 1 1 0
.........................................................TGAGGAAGTAGATTGTATAGT......................................................................................................... 21 1 2 1.00 2 2 0
....................................................GGGGATGAGGTAGTAGATTGTATAG.......................................................................................................... 25 1 1 1.00 1 1 0
.........................................................TGAGGTAGGAGATTGTATAG.......................................................................................................... 20 1 2 1.00 2 1 1
........................................................ATGAGGTAGTAGATTGTATAGTTT....................................................................................................... 24 0 1 1.00 1 0 1
.........................................................TGAGGCAGTAGATTGTATAGTT........................................................................................................ 22 1 2 1.00 2 0 2
........................................................CTGAGGTAGTAGATTGTATAGT......................................................................................................... 22 1 2 1.00 2 2 0
.........................................................TGAGGGAGTAGATTGTATAGTTT....................................................................................................... 23 1 1 1.00 1 0 1
........................................................ATGAGGTAGTAGATTGTAT............................................................................................................ 19 0 1 1.00 1 1 0
.........................................................TGAGGTAGTAGATTGTA............................................................................................................. 17 0 2 1.00 2 1 1
.........................................................TGAGGTAGTAGATTGTATAGTTTTC..................................................................................................... 25 1 1 1.00 1 1 0
.........................................................TGAGGTAGTAGATCGTATA........................................................................................................... 19 1 2 0.50 1 1 0
............................................................GGTAGTAGATTGTATAG.......................................................................................................... 17 0 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTGTATAGTTTATC.................................................................................................... 26 3 2 0.50 1 1 0
.........................................................TGAGGTAGTATATTGTATAGTT........................................................................................................ 22 1 2 0.50 1 0 1
.......................................................AATGAGGTAGTAGATTGTAT............................................................................................................ 20 1 2 0.50 1 1 0
...........................................................................................................CTATACAGTCTACTGTCTTC........................................................ 20 1 2 0.50 1 0 1
.........................................................TGTGGTAGTAGATTGTATAG.......................................................................................................... 20 1 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTGTATAA.......................................................................................................... 20 1 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTGTATAGTTATTC.................................................................................................... 26 3 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTGTATAGTTTTGC.................................................................................................... 26 2 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTTTATAG.......................................................................................................... 20 1 2 0.50 1 0 1
.........................................................TGAGGTAGTAGATTGTATAGTA........................................................................................................ 22 1 2 0.50 1 1 0
........................................................ATGAGGTAGTAAATTGTATAGTTGT...................................................................................................... 25 2 2 0.50 1 1 0
.......................................................AATGAGGTAGTAGATTGTATAGTT........................................................................................................ 24 1 2 0.50 1 0 1
..........................................................GAGGTAGTACATTGTATAGTT........................................................................................................ 21 1 2 0.50 1 0 1
.........................................................TGAGGTAGTAGATTGTATAGA......................................................................................................... 21 1 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTGAATAGT......................................................................................................... 21 1 2 0.50 1 1 0
.......................................................AATGAGGTAGTAGACTGTATAG.......................................................................................................... 22 2 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTGTATATTT........................................................................................................ 22 1 2 0.50 1 0 1
.........................................................TGAGGTAGTAGACTGTATAG.......................................................................................................... 20 1 2 0.50 1 1 0
.........................................................GGAGGTAGTAGATTGTATA........................................................................................................... 19 1 2 0.50 1 0 1
.........................................................TGAGGTAGAAGATTGTATAGTT........................................................................................................ 22 1 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTGTATAGTTTG...................................................................................................... 24 1 2 0.50 1 1 0
.........................................................TGAGGGAGTAGATTGTATAGTT........................................................................................................ 22 1 2 0.50 1 0 1
.........................................................TGCGGTAGTAGATTGTATAGTT........................................................................................................ 22 1 2 0.50 1 0 1
.........................................................TGAGGTAGCAGATTGTATAG.......................................................................................................... 20 1 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTGTTTAGTT........................................................................................................ 22 1 2 0.50 1 0 1
.........................................................TGGGGTAGTAGATTGTATAGTT........................................................................................................ 22 1 2 0.50 1 1 0
........................................................ATGAGGTAGTAGATTGCATA........................................................................................................... 20 1 2 0.50 1 1 0
.........................................................CGAGGTAGTAGATTGTATAG.......................................................................................................... 20 1 2 0.50 1 0 1
...........................................................AGGTAGTAGATTGTATAG.......................................................................................................... 18 0 2 0.50 1 1 0
..........................................................GAGGTAGAAGATTGTATAGT......................................................................................................... 20 1 2 0.50 1 1 0
.........................................................TGGGGTAGTAGATTGTATAGT......................................................................................................... 21 1 2 0.50 1 1 0
.........................................................TGAGGTTGTAGATTGTATAGT......................................................................................................... 21 1 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTATATAG.......................................................................................................... 20 1 2 0.50 1 1 0
.........................................................TGAGGTAGTCGATTGTATA........................................................................................................... 19 1 2 0.50 1 1 0
.........................................................TGCGGTAGTAGATTGTATAG.......................................................................................................... 20 1 2 0.50 1 0 1
.........................................................TGAGGTAGTAGATCGTAT............................................................................................................ 18 1 2 0.50 1 1 0
.........................................................TGAGGTAGTAGATTGGATAG.......................................................................................................... 20 1 2 0.50 1 0 1
..........................................................GAGGAAGTAGATTGTATAG.......................................................................................................... 19 1 3 0.33 1 1 0
.........................................................TGAGGTGGTAGATTGTATAG.......................................................................................................... 20 1 3 0.33 1 1 0
....................................................TTGCGTGAGGTAGTAGATTGTATAG.......................................................................................................... 25 3 3 0.33 1 1 0
.........................................................TGAGGTAGTAGATTGTATAGTTCAC..................................................................................................... 25 3 3 0.33 1 1 0
.........................................................TGAGGTAGTAGATTGTATAGTTAA...................................................................................................... 24 2 3 0.33 1 1 0
.........................................................TGAGGTAGTAGATTGTACAGTTA....................................................................................................... 23 2 4 0.25 1 1 0
.....................................................ACGCTGAGGTAGTAGATTGTATAG.......................................................................................................... 24 3 4 0.25 1 1 0
.........................................................TGAGGGAGTAGATTGTATA........................................................................................................... 19 1 5 0.20 1 0 1
.........................................................TGAGGTAGTAGCTTGTATAG.......................................................................................................... 20 1 5 0.20 1 1 0
.........................................................TGAGGAAGTAGATTGTATA........................................................................................................... 19 1 5 0.20 1 1 0
.........................................................GGAGGGAGTAGATTGTATAG.......................................................................................................... 20 2 6 0.17 1 0 1

Anti-sense strand reads

TGGGAAGACATATCGACCGGGTACCCCCGACTTCTACCTGTGACCATGAGACACCCTACTCCATCATCTAACATATCAAAATCCCAGTATGGGGTAGAACCTCTATTGATATGTCAGATGACAGAAAGGGTGCCACCATGCGAAGAGAAGACTGACCGAGTCAAGTCCCAAAAAAACCAAAAC
*****************************************..(((((((((((((.((((((((((((((((((((((((((((........))))))))....)))))))))))))))))))))))))))).)))))..****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 01:02 AM