ID:

ocu-let-7e

 Coordinate:

chr14:144548245-144548321 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.0 -38.0 -38.0

Sense Strand Reads

GACTGAAGATATGATAAGGAGTTTGAAGCCACATGCGAAGCTGTGTGCATCCGGGTTGAGGTAGTAGGTTGTATGGTTTAGAGTTACACCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCATACTTGAGCCATCGAGGAATTCTTCATCACTTTGATCTGATTGAGC
*****************************************.((((((.((((((..(((.(((.(((((((((((((..((.((.((...)).)).))))))))))))))).))).)))..))))))))))))..***************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
........................................................TGAGGTAGTAGGTTGTATGG..................................................................................................... 20 0 1 544.00 544 394 150
........................................................TGAGGTAGTAGGTTGTATGGT.................................................................................................... 21 0 1 307.00 307 216 91
........................................................TGAGGTAGTAGGTTGTATGGTT................................................................................................... 22 0 1 79.00 79 61 18
........................................................TGAGGTAGTAGGTTGTATG...................................................................................................... 19 0 1 55.00 55 42 13
.........................................................GAGGTAGTAGGTTGTATGG..................................................................................................... 19 0 1 25.00 25 15 10
.........................................................GAGGTAGTAGGTTGTATGGT.................................................................................................... 20 0 1 23.00 23 12 11
.......................................................ATGAGGTAGTAGGTTGTATGG..................................................................................................... 21 1 2 13.00 26 7 19
........................................................TGAGGTAGTAGGTTGTAT....................................................................................................... 18 0 4 10.75 43 30 13
............................................................GTAGTAGGTTGTATGGT.................................................................................................... 17 0 1 10.00 10 9 1
........................................................TGAGGGAGTAGGTTGTATGG..................................................................................................... 20 1 1 6.00 6 5 1
........................................................TGAGGGAGTAGGTTGTATGGT.................................................................................................... 21 1 1 5.00 5 3 2
.......................................................ATGAGGTAGTAGGTTGTATGGT.................................................................................................... 22 1 2 4.00 8 0 8
........................................................TGAGGTAGTAGGTTGTATGGTTA.................................................................................................. 23 1 1 4.00 4 1 3
.......................................................TTGAGGTAGTAGGTTGTATG...................................................................................................... 20 0 1 3.00 3 3 0
.........................................................GAGGTAGTAGGTTGTATGGTT................................................................................................... 21 0 1 3.00 3 0 3
............................................................GTAGTAGGTTGTATGGTT................................................................................................... 18 0 1 3.00 3 3 0
........................................................AGAGGTAGTAGGTTGTATGG..................................................................................................... 20 1 1 3.00 3 3 0
........................................................TGAGGTAGGAGGTTGTAT....................................................................................................... 18 1 8 2.38 19 13 6
........................................................TGAGGTAGTAGGTTGTGTGGTTAAG................................................................................................ 25 2 1 2.00 2 2 0
........................................................TGAGGCAGTAGGTTGTATGG..................................................................................................... 20 1 1 2.00 2 2 0
........................................................TGAAGTAGTAGGTTGTATGG..................................................................................................... 20 1 1 2.00 2 2 0
........................................................TGAGGTAGTAGGTTGTATGGTTTA................................................................................................. 24 0 1 2.00 2 1 1
.........................................................GAGGTAGTAGGTTGTATGGTTT.................................................................................................. 22 0 1 2.00 2 0 2
........................................................TGAGGTAGTAGGTTGT......................................................................................................... 16 0 5 1.80 9 9 0
.......................................................ATGAGGTAGTAGGTTGTATG...................................................................................................... 20 1 2 1.50 3 0 3
......................................................AATGAGGTAGTAGGTTGTATG...................................................................................................... 21 2 2 1.50 3 3 0
.........................................................GAGGTAGTAGGTTGTATG...................................................................................................... 18 0 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTTTATGG..................................................................................................... 20 1 1 1.00 1 1 0
.......................................................ATGAGGTAGTAGGTTGTATGGTT................................................................................................... 23 1 2 1.00 2 2 0
........................................................TGAGGAAGTAGGTTGTATGG..................................................................................................... 20 1 2 1.00 2 1 1
........................................................TGAGGTAGTCGGTTGTATGGTT................................................................................................... 22 1 1 1.00 1 1 0
........................................................TGAGGTAGTAGTTTGTATGGT.................................................................................................... 21 1 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTGTATGGTTCATC............................................................................................... 26 3 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTCTATGG..................................................................................................... 20 1 1 1.00 1 1 0
..................................................GGGGATTGAGGTAGTAGGTTGTATGG..................................................................................................... 26 3 1 1.00 1 0 1
.....................................................AATTGAGGTAGTAGGTTGTATGGT.................................................................................................... 24 2 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTGCATGGTT................................................................................................... 22 1 1 1.00 1 1 0
........................................................TGAGGTAGTAGGTTGTGTGGTTAA................................................................................................. 24 2 2 1.00 2 2 0
........................................................TGAGGTAGTCGGTTGTATGGT.................................................................................................... 21 1 1 1.00 1 1 0
.............................................................TAGTAGGTTGTATGGTT................................................................................................... 17 0 1 1.00 1 1 0
......................................................AATGAGGTAGTAGGTTGTATGG..................................................................................................... 22 2 2 1.00 2 0 2
........................................................TGAGGTAGTAGGTTGTGTGGTTTA................................................................................................. 24 1 2 1.00 2 1 1
........................................................TGAGGTAGTCGGTTGTATGG..................................................................................................... 20 1 1 1.00 1 1 0
........................................................TGATGTAGTAGGTTGTATGG..................................................................................................... 20 1 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTGTGTGGTTTAGT............................................................................................... 26 2 1 1.00 1 1 0
........................................................TGAGGTAGTAGGATGTATGG..................................................................................................... 20 1 1 1.00 1 1 0
...........................................................GGTAGTAGGTTGTATGG..................................................................................................... 17 0 1 1.00 1 1 0
.....................................................GACTGAGGTAGTAGGTTGTATGG..................................................................................................... 23 2 1 1.00 1 0 1
..........................................................AGGTAGTAGGTTGTATGGT.................................................................................................... 19 0 1 1.00 1 0 1
.......................................................TTGAGGTAGTAGGTTGTATGGT.................................................................................................... 22 0 1 1.00 1 0 1
.........................................................GAGGTAGTAGGTTGTATGGTTA.................................................................................................. 22 1 1 1.00 1 0 1
........................................................TGAGGGAGTAGGTTGTATGGTT................................................................................................... 22 1 1 1.00 1 1 0
........................................................TGCGGTAGTAGGTTGTATGG..................................................................................................... 20 1 1 1.00 1 1 0
...........................................................GGTAGTAGGTTGTATGGTT................................................................................................... 19 0 1 1.00 1 1 0
........................................................TGAGGTAGTAGGTTGTATGGTTT.................................................................................................. 23 0 1 1.00 1 1 0
........................................................TGAGGCAGTAGGTTGTATGGT.................................................................................................... 21 1 1 1.00 1 0 1
....................................GAAGCTGTGTGCATCCGGG.......................................................................................................................... 19 0 1 1.00 1 1 0
........................................................................................................TACAACCTTCTAGCTTT........................................................ 17 0 1 1.00 1 0 1
........................................................TGAGGTAGGAGGTTGTATGG..................................................................................................... 20 1 1 1.00 1 1 0
........................................................TGAGGTAGTAGGCTGTATGG..................................................................................................... 20 1 1 1.00 1 1 0
........................................................TGAGGTAGCAGGTTGTATGGTT................................................................................................... 22 1 1 1.00 1 1 0
.........................................................GAGGGAGTAGGTTGTATGGT.................................................................................................... 20 1 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTGTCTGGT.................................................................................................... 21 1 2 0.50 1 1 0
.....................................................GAATGAGGTAGTAGGTTGTATGG..................................................................................................... 23 2 2 0.50 1 0 1
..............................................................AGTAGGTTGTATGGTTGAG................................................................................................ 19 1 2 0.50 1 1 0
.....................................................CGTTGAGGTAGTAGGTTGTAT....................................................................................................... 21 1 2 0.50 1 0 1
........................................................TGAGGTAGTAGGTTGTGTGGTTTTTAG.............................................................................................. 27 3 2 0.50 1 0 1
........................................................TGAGGTAGTAGGTTGTATGGTCGC................................................................................................. 24 3 2 0.50 1 0 1
..................................................TCGGAATGAGGTAGTAGGTTGTATGGT.................................................................................................... 27 3 2 0.50 1 0 1
......................................................CATGAGGTAGTAGGTTGTATGG..................................................................................................... 22 2 2 0.50 1 0 1
........................................................TGAGGTAGTAGGTTGTATGGTTTGCC............................................................................................... 26 3 2 0.50 1 0 1
...................................................GGGGATGAGGTAGTAGGTTGTATGGTTT.................................................................................................. 28 2 2 0.50 1 0 1
......................................................AATGAGGTAGTAGGTTGTATGGTT................................................................................................... 24 2 2 0.50 1 1 0
....................................................TGTGTGAGGTAGTAGGTTGTATGG..................................................................................................... 24 3 5 0.40 2 0 2
.......................................................ATGAGGTAGTAGGCTGTATGG..................................................................................................... 21 2 3 0.33 1 0 1
...........................................................GGTAGTAGGTTGTAT....................................................................................................... 15 0 4 0.25 1 1 0
........................................................TGAGGTAGTAGGTTGTA........................................................................................................ 17 0 4 0.25 1 1 0
.........................................................GAGGTAGTAGGTTGTAT....................................................................................................... 17 0 4 0.25 1 0 1
........................................................TGAGGTAGTAGGGTGTAT....................................................................................................... 18 1 5 0.20 1 0 1
........................................................TGAGGGAGTAGGTTGTAT....................................................................................................... 18 1 11 0.18 2 1 1
........................................................TGAGGTAGTAGGTTGTAA....................................................................................................... 18 1 7 0.14 1 0 1
.........................................................GAGGTAGTAGGTTGT......................................................................................................... 15 0 8 0.13 1 0 1

Anti-sense strand reads

CTGACTTCTATACTATTCCTCAAACTTCGGTGTACGCTTCGACACACGTAGGCCCAACTCCATCATCCAACATACCAAATCTCAATGTGGGACCCTCAATTGACATGTTGGAAGATCGAAAGGAACCTCGTATGAACTCGGTAGCTCCTTAAGAAGTAGTGAAACTAGACTAACTCG
*****************************************.((((((.((((((..(((.(((.(((((((((((((..((.((.((...)).)).))))))))))))))).))).)))..))))))))))))..***************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:34 AM