ID:

ocu-let-7c-2

 Coordinate:

chrUn0230:73620-73712 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.6 -44.1 -44.0
mature
  1. chr1:71563893-71563912 +
  2. chr1:95875282-95875301 +
  3. chrUn0230:73632-73651 +
star
  1. chr1:71563944-71563963 +
  2. chrUn0230:73680-73699 +

Sense Strand Reads

TCCAGGAGGCGTCTCCAGAAGCCACGAAGCCATCTCGGCGTGAGACTGACCGCCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTGGGGCTCCGCCCTGCTATGGGATAACTATACAATCTACTGTCTTTCCTGAAGTGGTGTGATATCTGCGGTGGACGGCGTCCAGGACCCCGGCGCAGGAGGGCAGCTTG
***********************************************...((((((((((((.(((((((((((((((((((((((((((...)))))).........))))))))))))))))))))))))))))).))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
..............................................................TGAGGTAGTAGGTTGTATAG............................................................................................................... 20 0 3 163.67 491 307 184
..............................................................TGAGGTAGTAGGTTGTATAGT.............................................................................................................. 21 0 3 72.67 218 166 52
..............................................................TGAGGTAGTAGGTTGTATA................................................................................................................ 19 0 3 35.33 106 71 35
..............................................................TGAGGTAGTAGGTTGTATAGTT............................................................................................................. 22 0 3 33.67 101 35 66
..............................................................TGAGGTAGGAGGTTGTATAG............................................................................................................... 20 1 3 31.00 93 46 47
..............................................................TGAGGTAGGAGGTTGTATAGT.............................................................................................................. 21 1 3 23.33 70 30 40
..............................................................TGAGGTAGTAGGTTGTAT................................................................................................................. 18 0 4 10.75 43 13 30
...............................................................GAGGTAGTAGGTTGTATAG............................................................................................................... 19 0 3 8.67 26 24 2
..............................................................TGAGGTAGTAGGTTGTATAGTTA............................................................................................................ 23 1 3 7.00 21 21 0
..............................................................TGAGGTAGTAGGTTGTATAGTTT............................................................................................................ 23 0 3 4.67 14 11 3
..............................................................TGAGGTAGGAGGTTGTATAGTT............................................................................................................. 22 1 3 4.33 13 4 9
...............................................................GAGGTAGTAGGTTGTATA................................................................................................................ 18 0 3 4.00 12 10 2
..............................................................................................................CTATACAATCTACTGTCTTTCT............................................................. 22 1 2 3.50 7 0 7
...............................................................GAGGTAGTAGGTTGTATAGT.............................................................................................................. 20 0 3 3.33 10 9 1
...............................................................GAGGTAGTAGGTTGTATAGTT............................................................................................................. 21 0 3 2.67 8 1 7
..............................................................TGAGGTAGGAGGTTGTAT................................................................................................................. 18 1 8 2.38 19 6 13
..............................................................TGAGGTAGGAGGTTGTATA................................................................................................................ 19 1 3 2.33 7 4 3
..............................................................TGAGGTAGTAGGTTGTATAGTA............................................................................................................. 22 1 3 2.00 6 6 0
...............................................................GAGGTAGGAGGTTGTATAG............................................................................................................... 19 1 3 2.00 6 6 0
..............................................................TGAGGTAGTAGGTTGT................................................................................................................... 16 0 5 1.80 9 0 9
..............................................................................................................CTATACAATCTACTGTCTTT............................................................... 20 0 2 1.50 3 2 1
..............................................................TGAGGTAGTAGGTTGTATAGTTCGTA......................................................................................................... 26 3 2 1.50 3 3 0
...............................................................GAGGTAGGAGGTTGTATAGT.............................................................................................................. 20 1 3 1.33 4 4 0
..............................................................TGAGGGAGTAGGTTGTATAG............................................................................................................... 20 1 3 1.33 4 3 1
..............................................................................................................CTATACAATCTACTGTCTTTCTTGAGGT....................................................... 28 2 1 1.00 1 1 0
..............................................................TGAGGGAGTAGGTTGTATAGTT............................................................................................................. 22 1 3 1.00 3 1 2
..............................................................................................................CTATACAATCTACTGTCTTTC.............................................................. 21 0 2 1.00 2 2 0
...........................................................AGGTGAGGTAGTAGGTTGTATAG............................................................................................................... 23 1 1 1.00 1 1 0
..............................................................TGAGGTAGGAGGTTGTATAGTA............................................................................................................. 22 2 3 1.00 3 1 2
.........................................................TGGCGTGAGGTAGTAGGTTGTATGG............................................................................................................... 25 2 1 1.00 1 1 0
..............................................................TGAGGGAGTAGGTTGTATAGT.............................................................................................................. 21 1 3 0.67 2 2 0
..................................................................GTAGTAGGTTGTATAGT.............................................................................................................. 17 0 3 0.67 2 0 2
..............................................................TGAGGCAGTAGGTTGTATAG............................................................................................................... 20 1 3 0.67 2 1 1
..............................................................TGAGGTAGTCGGTTGTATAG............................................................................................................... 20 1 3 0.67 2 1 1
..............................................................TGAGGTAGTAGATTGTATAGTTTG........................................................................................................... 24 1 2 0.50 1 1 0
..............................................................TGAGGTAGTAGGTTGTATGGTTTGCC......................................................................................................... 26 3 2 0.50 1 1 0
.............................................................ATGAGGTAGTAGGTTGTATAGTCTG........................................................................................................... 25 2 2 0.50 1 1 0
...........................................................................................................AAACTATACAATCTACTGTCTT................................................................ 22 1 2 0.50 1 1 0
..........................................................TGTGTGAGGTAGTAGGTTGTATGG............................................................................................................... 24 3 5 0.40 2 2 0
..............................................................TTAGGTAGTAGGTTGTATAG............................................................................................................... 20 1 3 0.33 1 1 0
...............................................................GAGGTAGTAGGTTGTAAAGT.............................................................................................................. 20 1 3 0.33 1 1 0
..............................................................TGAGGTAGTACGTTGTATAGT.............................................................................................................. 21 1 3 0.33 1 1 0
...............................................................GAGGTAGAAGGTTGTATAGTT............................................................................................................. 21 1 3 0.33 1 1 0
...............................................................GAGGCAGTAGGTTGTATAGT.............................................................................................................. 20 1 3 0.33 1 1 0
.........................................................TTGCGTGAGGTAGTAGATTGTATAG............................................................................................................... 25 3 3 0.33 1 1 0
..............................................................TGAGGTAGTAGGTTGTAAAG............................................................................................................... 20 1 3 0.33 1 1 0
.................................................................GGTAGTAGGTTGTATAGTTT............................................................................................................ 20 0 3 0.33 1 1 0
..............................................................TGAGGTAGTAGGTTGTATAGTTTCCT......................................................................................................... 26 3 3 0.33 1 1 0
..............................................................TGAGGTAGTAGGTTGTATAGTTAGAA......................................................................................................... 26 3 3 0.33 1 1 0
..............................................................TGAGGTAGTGGGTTGTATAG............................................................................................................... 20 1 3 0.33 1 0 1
..............................................................TGAGGTAGTAGGTTGTATAGTTTTG.......................................................................................................... 25 1 3 0.33 1 1 0
..................................................................GTAGTAGGTTGTATAG............................................................................................................... 16 0 3 0.33 1 0 1
..............................................................TGAGGCAGTAGGTTGTATAGTT............................................................................................................. 22 1 3 0.33 1 0 1
..............................................................TGAGGTAGTAGGTTGTATAGA.............................................................................................................. 21 1 3 0.33 1 1 0
....................................................................AGTAGGTTGTATAGTTTGAGGT....................................................................................................... 22 2 3 0.33 1 0 1
..............................................................TGAGGTAGGAGGTTTTATAGTTT............................................................................................................ 23 2 3 0.33 1 0 1
..............................................................TGAGGTAGTAGGTTGTATAGTTC............................................................................................................ 23 1 3 0.33 1 1 0
................................................................AGGTAGTAGGTTGTATAGTT............................................................................................................. 20 0 3 0.33 1 0 1
...............................................................GATGTAGTAGGTTGTATAG............................................................................................................... 19 1 3 0.33 1 1 0
..............................................................TGAGGTAGGAGGTTGTATAGTTT............................................................................................................ 23 1 3 0.33 1 0 1
..............................................................TGAGGCAGTAGGTTGTATAGT.............................................................................................................. 21 1 3 0.33 1 1 0
..............................................................TGAGGTAGTAGGTTGTATAGTTGCC.......................................................................................................... 25 3 4 0.25 1 1 0
.................................................................GGTAGTAGGTTGTAT................................................................................................................. 15 0 4 0.25 1 0 1
..............................................................TGAGGTAGTAGGTTGCATAGT.............................................................................................................. 21 1 4 0.25 1 1 0
...............................................................GAGGAAGTAGGTTGTATAGT.............................................................................................................. 20 1 4 0.25 1 0 1
...............................................................GAGGTAGTAGGTTGTAT................................................................................................................. 17 0 4 0.25 1 1 0
..............................................................TGAGGAAGTAGGTTGTATAG............................................................................................................... 20 1 4 0.25 1 1 0
...............................................................GAGGTAGGAGGTTGTATA................................................................................................................ 18 1 4 0.25 1 1 0
..............................................................TGAGGTAGCAGGTTGTATAG............................................................................................................... 20 1 4 0.25 1 1 0
..............................................................TGAGGAAGTAGGTTGTATAGT.............................................................................................................. 21 1 4 0.25 1 1 0
..............................................................TGAGGTAGGAGGTTGTATAGA.............................................................................................................. 21 2 4 0.25 1 1 0
..............................................................TGGGGTAGTAGGTTGTATAG............................................................................................................... 20 1 4 0.25 1 1 0
..............................................................TGAGGTAGTAGGTTGTA.................................................................................................................. 17 0 4 0.25 1 0 1
..............................................................TGAGGTAGTAGGCTGTATAG............................................................................................................... 20 1 4 0.25 1 1 0
...............................................................GAGGAAGTAGGTTGTATAG............................................................................................................... 19 1 5 0.20 1 1 0
..............................................................TGAGGTAGTAGGGTGTAT................................................................................................................. 18 1 5 0.20 1 1 0
..............................................................TGAGGTAGTAGCTTGTATAG............................................................................................................... 20 1 5 0.20 1 1 0
..............................................................TGTGGTAGGAGGTTGTATAGT.............................................................................................................. 21 2 5 0.20 1 1 0
..............................................................TGAGGTAGTAGGTTGTACAG............................................................................................................... 20 1 5 0.20 1 1 0
..............................................................TGAGGTAGTAGGTTCTATA................................................................................................................ 19 1 5 0.20 1 0 1
...................................................................TAGTAGGTTGTATAG............................................................................................................... 15 0 5 0.20 1 1 0
..............................................................TGAGGTAGGAGGTTGCATAGT.............................................................................................................. 21 2 5 0.20 1 1 0
..............................................................TGAGGGAGTAGGTTGTAT................................................................................................................. 18 1 11 0.18 2 1 1
..............................................................TGAGGTTGGAGGTTGTATAG............................................................................................................... 20 2 6 0.17 1 1 0
..............................................................TGAGGGAGTAGGTTGTATA................................................................................................................ 19 1 6 0.17 1 0 1
..............................................................TGAGGTAGGAGGCTGTATAGT.............................................................................................................. 21 2 6 0.17 1 1 0
...............................................................GGGGTAGTAGGTTGTATA................................................................................................................ 18 1 6 0.17 1 1 0
....................................................................AGTAGGTTGTATAGT.............................................................................................................. 15 0 6 0.17 1 1 0
...........................................................TACTGAGGTAGTAGGTTGTATAG............................................................................................................... 23 3 7 0.14 1 1 0
..............................................................TGAGGCAGGAGGTTGTATAGT.............................................................................................................. 21 2 7 0.14 1 1 0
..............................................................TGAGGTAGTAGGTTGTAA................................................................................................................. 18 1 7 0.14 1 1 0
...............................................................GAGGTAGTAGGTTGT................................................................................................................... 15 0 8 0.13 1 1 0
..............................................................TGAGGTAGTAGGTTACATAG............................................................................................................... 20 2 9 0.11 1 1 0
...............................................................GAGGTAGGAGGGTGTATAGT.............................................................................................................. 20 2 13 0.08 1 1 0
..............................................................TGAGGTAGGAGGTTGTATAA............................................................................................................... 20 2 14 0.07 1 0 1
..............................................................TGAGGGAGGAGGTTGTATAG............................................................................................................... 20 2 20 0.05 1 1 0

Anti-sense strand reads

AGGTCCTCCGCAGAGGTCTTCGGTGCTTCGGTAGAGCCGCACTCTGACTGGCGGGAAACCCCACTCCATCATCCAACATATCAAACCCCGAGGCGGGACGATACCCTATTGATATGTTAGATGACAGAAAGGACTTCACCACACTATAGACGCCACCTGCCGCAGGTCCTGGGGCCGCGTCCTCCCGTCGAAC
************************************************...((((((((((((.(((((((((((((((((((((((((((...)))))).........))))))))))))))))))))))))))))).))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes
................................................................................................................................................................AGCAGGTGCTGGGGCCGC............... 18 2 20 0.05 1 1

Generated: 05/16/2015 at 12:57 AM