ID:

ocu-let-7c-1

 Coordinate:

chr14:144548236-144548329 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.0 -38.0 -38.0

Sense Strand Reads

GGAGGAGTTGACTGAAGATATGATAAGGAGTTTGAAGCCACATGCGAAGCTGTGTGCATCCGGGTTGAGGTAGTAGGTTGTATGGTTTAGAGTTACACCCTGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGCATACTTGAGCCATCGAGGAATTCTTCATCACTTTGATCTGATTGAGCCAATTTCT
**************************************************.((((((.((((((..(((.(((.(((((((((((((..((.((.((...)).)).))))))))))))))).))).)))..))))))))))))..************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.................................................................TGAGGTAGTAGGTTGTATGG............................................................................................................. 20 0 1 544.00 544 394 150
.................................................................TGAGGTAGTAGGTTGTATGGT............................................................................................................ 21 0 1 307.00 307 216 91
.................................................................TGAGGTAGTAGGTTGTATGGTT........................................................................................................... 22 0 1 79.00 79 61 18
.................................................................TGAGGTAGTAGGTTGTATG.............................................................................................................. 19 0 1 55.00 55 42 13
..................................................................GAGGTAGTAGGTTGTATGG............................................................................................................. 19 0 1 25.00 25 15 10
..................................................................GAGGTAGTAGGTTGTATGGT............................................................................................................ 20 0 1 23.00 23 12 11
................................................................ATGAGGTAGTAGGTTGTATGG............................................................................................................. 21 1 2 13.00 26 7 19
.................................................................TGAGGTAGTAGGTTGTAT............................................................................................................... 18 0 4 10.75 43 30 13
.....................................................................GTAGTAGGTTGTATGGT............................................................................................................ 17 0 1 10.00 10 9 1
.................................................................TGAGGGAGTAGGTTGTATGG............................................................................................................. 20 1 1 6.00 6 5 1
.................................................................TGAGGGAGTAGGTTGTATGGT............................................................................................................ 21 1 1 5.00 5 3 2
................................................................ATGAGGTAGTAGGTTGTATGGT............................................................................................................ 22 1 2 4.00 8 0 8
.................................................................TGAGGTAGTAGGTTGTATGGTTA.......................................................................................................... 23 1 1 4.00 4 1 3
................................................................TTGAGGTAGTAGGTTGTATG.............................................................................................................. 20 0 1 3.00 3 3 0
..................................................................GAGGTAGTAGGTTGTATGGTT........................................................................................................... 21 0 1 3.00 3 0 3
.....................................................................GTAGTAGGTTGTATGGTT........................................................................................................... 18 0 1 3.00 3 3 0
.................................................................AGAGGTAGTAGGTTGTATGG............................................................................................................. 20 1 1 3.00 3 3 0
.................................................................TGAGGTAGGAGGTTGTAT............................................................................................................... 18 1 8 2.38 19 13 6
.................................................................TGAGGTAGTAGGTTGTGTGGTTAAG........................................................................................................ 25 2 1 2.00 2 2 0
.................................................................TGAGGCAGTAGGTTGTATGG............................................................................................................. 20 1 1 2.00 2 2 0
.................................................................TGAAGTAGTAGGTTGTATGG............................................................................................................. 20 1 1 2.00 2 2 0
.................................................................TGAGGTAGTAGGTTGTATGGTTTA......................................................................................................... 24 0 1 2.00 2 1 1
..................................................................GAGGTAGTAGGTTGTATGGTTT.......................................................................................................... 22 0 1 2.00 2 0 2
.................................................................TGAGGTAGTAGGTTGT................................................................................................................. 16 0 5 1.80 9 9 0
................................................................ATGAGGTAGTAGGTTGTATG.............................................................................................................. 20 1 2 1.50 3 0 3
...............................................................AATGAGGTAGTAGGTTGTATG.............................................................................................................. 21 2 2 1.50 3 3 0
..................................................................GAGGTAGTAGGTTGTATG.............................................................................................................. 18 0 1 1.00 1 0 1
.................................................................TGAGGTAGTAGGTTTTATGG............................................................................................................. 20 1 1 1.00 1 1 0
................................................................ATGAGGTAGTAGGTTGTATGGTT........................................................................................................... 23 1 2 1.00 2 2 0
.................................................................TGAGGAAGTAGGTTGTATGG............................................................................................................. 20 1 2 1.00 2 1 1
.................................................................TGAGGTAGTCGGTTGTATGGTT........................................................................................................... 22 1 1 1.00 1 1 0
.................................................................TGAGGTAGTAGTTTGTATGGT............................................................................................................ 21 1 1 1.00 1 0 1
.................................................................TGAGGTAGTAGGTTGTATGGTTCATC....................................................................................................... 26 3 1 1.00 1 0 1
.................................................................TGAGGTAGTAGGTTCTATGG............................................................................................................. 20 1 1 1.00 1 1 0
...........................................................GGGGATTGAGGTAGTAGGTTGTATGG............................................................................................................. 26 3 1 1.00 1 0 1
..............................................................AATTGAGGTAGTAGGTTGTATGGT............................................................................................................ 24 2 1 1.00 1 0 1
.................................................................TGAGGTAGTAGGTTGCATGGTT........................................................................................................... 22 1 1 1.00 1 1 0
.................................................................TGAGGTAGTAGGTTGTGTGGTTAA......................................................................................................... 24 2 2 1.00 2 2 0
.................................................................TGAGGTAGTCGGTTGTATGGT............................................................................................................ 21 1 1 1.00 1 1 0
......................................................................TAGTAGGTTGTATGGTT........................................................................................................... 17 0 1 1.00 1 1 0
...............................................................AATGAGGTAGTAGGTTGTATGG............................................................................................................. 22 2 2 1.00 2 0 2
.................................................................TGAGGTAGTAGGTTGTGTGGTTTA......................................................................................................... 24 1 2 1.00 2 1 1
.................................................................TGAGGTAGTCGGTTGTATGG............................................................................................................. 20 1 1 1.00 1 1 0
.................................................................TGATGTAGTAGGTTGTATGG............................................................................................................. 20 1 1 1.00 1 0 1
.................................................................TGAGGTAGTAGGTTGTGTGGTTTAGT....................................................................................................... 26 2 1 1.00 1 1 0
.................................................................TGAGGTAGTAGGATGTATGG............................................................................................................. 20 1 1 1.00 1 1 0
....................................................................GGTAGTAGGTTGTATGG............................................................................................................. 17 0 1 1.00 1 1 0
..............................................................GACTGAGGTAGTAGGTTGTATGG............................................................................................................. 23 2 1 1.00 1 0 1
...................................................................AGGTAGTAGGTTGTATGGT............................................................................................................ 19 0 1 1.00 1 0 1
................................................................TTGAGGTAGTAGGTTGTATGGT............................................................................................................ 22 0 1 1.00 1 0 1
..................................................................GAGGTAGTAGGTTGTATGGTTA.......................................................................................................... 22 1 1 1.00 1 0 1
.................................................................TGAGGGAGTAGGTTGTATGGTT........................................................................................................... 22 1 1 1.00 1 1 0
.................................................................TGCGGTAGTAGGTTGTATGG............................................................................................................. 20 1 1 1.00 1 1 0
....................................................................GGTAGTAGGTTGTATGGTT........................................................................................................... 19 0 1 1.00 1 1 0
.................................................................TGAGGTAGTAGGTTGTATGGTTT.......................................................................................................... 23 0 1 1.00 1 1 0
.................................................................TGAGGCAGTAGGTTGTATGGT............................................................................................................ 21 1 1 1.00 1 0 1
.............................................GAAGCTGTGTGCATCCGGG.................................................................................................................................. 19 0 1 1.00 1 1 0
.................................................................................................................TACAACCTTCTAGCTTT................................................................ 17 0 1 1.00 1 0 1
.................................................................TGAGGTAGGAGGTTGTATGG............................................................................................................. 20 1 1 1.00 1 1 0
.................................................................TGAGGTAGTAGGCTGTATGG............................................................................................................. 20 1 1 1.00 1 1 0
.................................................................TGAGGTAGCAGGTTGTATGGTT........................................................................................................... 22 1 1 1.00 1 1 0
..................................................................GAGGGAGTAGGTTGTATGGT............................................................................................................ 20 1 1 1.00 1 0 1
.................................................................TGAGGTAGTAGGTTGTCTGGT............................................................................................................ 21 1 2 0.50 1 1 0
..............................................................GAATGAGGTAGTAGGTTGTATGG............................................................................................................. 23 2 2 0.50 1 0 1
.......................................................................AGTAGGTTGTATGGTTGAG........................................................................................................ 19 1 2 0.50 1 1 0
..............................................................CGTTGAGGTAGTAGGTTGTAT............................................................................................................... 21 1 2 0.50 1 0 1
.................................................................TGAGGTAGTAGGTTGTGTGGTTTTTAG...................................................................................................... 27 3 2 0.50 1 0 1
.................................................................TGAGGTAGTAGGTTGTATGGTCGC......................................................................................................... 24 3 2 0.50 1 0 1
...........................................................TCGGAATGAGGTAGTAGGTTGTATGGT............................................................................................................ 27 3 2 0.50 1 0 1
...............................................................CATGAGGTAGTAGGTTGTATGG............................................................................................................. 22 2 2 0.50 1 0 1
.................................................................TGAGGTAGTAGGTTGTATGGTTTGCC....................................................................................................... 26 3 2 0.50 1 0 1
............................................................GGGGATGAGGTAGTAGGTTGTATGGTTT.......................................................................................................... 28 2 2 0.50 1 0 1
...............................................................AATGAGGTAGTAGGTTGTATGGTT........................................................................................................... 24 2 2 0.50 1 1 0
.............................................................TGTGTGAGGTAGTAGGTTGTATGG............................................................................................................. 24 3 5 0.40 2 0 2
................................................................ATGAGGTAGTAGGCTGTATGG............................................................................................................. 21 2 3 0.33 1 0 1
....................................................................GGTAGTAGGTTGTAT............................................................................................................... 15 0 4 0.25 1 1 0
.................................................................TGAGGTAGTAGGTTGTA................................................................................................................ 17 0 4 0.25 1 1 0
..................................................................GAGGTAGTAGGTTGTAT............................................................................................................... 17 0 4 0.25 1 0 1
.................................................................TGAGGTAGTAGGGTGTAT............................................................................................................... 18 1 5 0.20 1 0 1
.................................................................TGAGGGAGTAGGTTGTAT............................................................................................................... 18 1 11 0.18 2 1 1
.................................................................TGAGGTAGTAGGTTGTAA............................................................................................................... 18 1 7 0.14 1 0 1
..................................................................GAGGTAGTAGGTTGT................................................................................................................. 15 0 8 0.13 1 0 1

Anti-sense strand reads

CCTCCTCAACTGACTTCTATACTATTCCTCAAACTTCGGTGTACGCTTCGACACACGTAGGCCCAACTCCATCATCCAACATACCAAATCTCAATGTGGGACCCTCAATTGACATGTTGGAAGATCGAAAGGAACCTCGTATGAACTCGGTAGCTCCTTAAGAAGTAGTGAAACTAGACTAACTCGGTTAAAGA
*************************************************.((((((.((((((..(((.(((.(((((((((((((..((.((.((...)).)).))))))))))))))).))).)))..))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:34 AM