ID:

ocu-let-7b

 Coordinate:

chrUn0230:74183-74267 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-67.5 -67.4 -67.4

Sense Strand Reads

GCGGCCGAGGCCCTGGGCAGGCAGGGCTGGGCACAGGCGGTGCGGGCACCTCGGGGTGAGGTAGTAGGTTGTGTGGTTTCAGGGCAGCGGTGTCGCCCCTCAGCAGATAACTATACAGCCTACTGCCTTCCCCGAGGGGTCCAGTGGCATGGCCGCCCGGGCGGTGTGGCCCGGGCACAACAAGA
***********************************.((.((..((((.((((((((.(((((((((((((((((((((((((((..(((....))))))).....)).))))))))))))))))))))))))))))).)))).)).))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
........................................................TGAGGTAGTAGGTTGTGTGGT............................................................................................................ 21 0 1 404.00 404 263 141
........................................................TGAGGTAGTAGGTTGTGTGG............................................................................................................. 20 0 1 247.00 247 202 45
........................................................TGAGGTAGTAGGTTGTGTGGTT........................................................................................................... 22 0 1 198.00 198 126 72
........................................................TGAGGTAGTAGGTTGTGTG.............................................................................................................. 19 0 1 35.00 35 22 13
........................................................TGAGGTAGTAGGTTGTGTGGTTT.......................................................................................................... 23 0 1 29.00 29 23 6
........................................................TGAGGTAGTAGGTTGTGTGGTTA.......................................................................................................... 23 1 1 25.00 25 19 6
.........................................................GAGGTAGTAGGTTGTGTGGT............................................................................................................ 20 0 1 19.00 19 10 9
.......................................................ATGAGGTAGTAGGTTGTGTGGT............................................................................................................ 22 1 1 17.00 17 5 12
........................................................TGAGGTAGTAGGTTGTGT............................................................................................................... 18 0 1 10.00 10 7 3
.........................................................GAGGTAGTAGGTTGTGTGG............................................................................................................. 19 0 1 10.00 10 9 1
........................................................TGAGGTAGTAGGTTGTGTGGTA........................................................................................................... 22 1 2 9.00 18 11 7
.......................................................ATGAGGTAGTAGGTTGTGTGGTT........................................................................................................... 23 1 1 8.00 8 0 8
.......................................................ATGAGGTAGTAGGTTGTGTGG............................................................................................................. 21 1 1 8.00 8 7 1
.........................................................GAGGTAATAGGTTGTGTGGT............................................................................................................ 20 1 1 6.00 6 6 0
..............................................................................TCAGGGCAGTGATGTCGCCCCTCCG.................................................................................. 25 3 1 3.00 3 0 3
........................................................TGAGGTAGTAGGTTGTGTGGTTTT......................................................................................................... 24 1 1 3.00 3 3 0
.......................................................ATGAGGTAGTAGGTTGTGTGGTTT.......................................................................................................... 24 1 1 3.00 3 0 3
......................................................................................................GCAGATAACTATACAGCCTACTGCCTTTTT..................................................... 30 3 1 3.00 3 3 0
........................................................TGAGGTAGTAGGTTGTGTGGTTAT......................................................................................................... 24 2 2 2.00 4 4 0
.........................................................GAGGTAGTAGGTTGTGTGGTT........................................................................................................... 21 0 1 2.00 2 2 0
........................................................TGAGGTAGTAGGTTGTGTGGTTAAA........................................................................................................ 25 2 1 2.00 2 1 1
........................................................TGAGGTAGTAGGTTGTGTGGTTTAAT....................................................................................................... 26 2 1 2.00 2 0 2
............................................................GTAGTAGGTTGTGTGG............................................................................................................. 16 0 1 2.00 2 2 0
........................................................TGAGGTAGCAGGTTGTGTGGTT........................................................................................................... 22 1 1 2.00 2 2 0
........................................................TGAGGTAGTAGGTTGTG................................................................................................................ 17 0 1 2.00 2 0 2
........................................................TGAGATAGTAGGTTGTGTGG............................................................................................................. 20 1 1 2.00 2 2 0
........................................................TGAGGTAGTAGGTTGTGTCG............................................................................................................. 20 1 1 2.00 2 2 0
.......................................................ATGAGGTAGTAGGTTGTGTG.............................................................................................................. 20 1 1 2.00 2 1 1
.........................................................GAGGTAGTAGGTTGTGTG.............................................................................................................. 18 0 1 2.00 2 1 1
........................................................TGAGGTAGTAGGTTGT................................................................................................................. 16 0 5 1.80 9 9 0
........................................................TGATGTAGTAGGTTGTGTGGT............................................................................................................ 21 1 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTGTGTGGTTAA......................................................................................................... 24 2 2 1.00 2 2 0
........................................................TGAGGTAGCAGGTTGTGTGGTTT.......................................................................................................... 23 1 1 1.00 1 1 0
........................................................TGAGGTAGTAGGTTGTGTGGTTTA......................................................................................................... 24 1 2 1.00 2 1 1
...................................................CAGGCTGAGGTAGTAGGTTGTGTGG............................................................................................................. 25 2 1 1.00 1 0 1
...............................................................................CAGGGCAGCGGTGTCGCCCCTCAGCA................................................................................ 26 0 1 1.00 1 0 1
........................................................TGAGGTATTAGGTTGTGTGGTT........................................................................................................... 22 1 1 1.00 1 1 0
........................................................TGAGGGAGTAGGTTGTGTGGTTTTA........................................................................................................ 25 2 1 1.00 1 1 0
........................................................TGAGGCAGTAGGTTGTGTGGT............................................................................................................ 21 1 2 1.00 2 1 1
....................................................GGAATGAGGTAGTAGGTTGTGTGGTTA.......................................................................................................... 27 3 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTGTGTGGTTTTA........................................................................................................ 25 1 1 1.00 1 1 0
......................................................AATGAGGTAGTAGGTTGTGTGGT............................................................................................................ 23 2 1 1.00 1 0 1
........................................................TGAGGGAGTAGGTTGTGTGGTTA.......................................................................................................... 23 2 1 1.00 1 1 0
........................................................TGAGGTAGTAGGTTGCGTGGTTT.......................................................................................................... 23 1 1 1.00 1 1 0
........................................................CGAGGTAGTAGGTTGTGTGGT............................................................................................................ 21 1 1 1.00 1 1 0
.........................................................GAGGTAGTAGGTTGTGTGGTTTT......................................................................................................... 23 1 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTGTGTGTTT........................................................................................................... 22 1 1 1.00 1 1 0
........................................................TGAGGTAGTGGGTTGTGTGGTT........................................................................................................... 22 1 1 1.00 1 0 1
.........................................................GAGGTGGTAGGTTGTGTGGT............................................................................................................ 20 1 1 1.00 1 0 1
.........................................................GAGGTAGTAGGTTGTGTGGTTA.......................................................................................................... 22 1 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTGTGTGGA............................................................................................................ 21 1 1 1.00 1 0 1
........................................................TGAGGTATTAGGTTGTGTGGT............................................................................................................ 21 1 1 1.00 1 1 0
........................................................TGAGGTAGTAGGATGTGTGGT............................................................................................................ 21 1 1 1.00 1 0 1
.....................................................GAATGAGGTAGTAGGTTGTGTGG............................................................................................................. 23 2 1 1.00 1 0 1
........................................................TGAGGAAGTAGGTTGTGTGGT............................................................................................................ 21 1 1 1.00 1 0 1
........................................................TGATGTAGTAGGTTGTGTGGTTT.......................................................................................................... 23 1 1 1.00 1 0 1
.........................................................GAGGTAGTAGGTTGCGTGGTT........................................................................................................... 21 1 1 1.00 1 0 1
........................................................TGAGGTAGTCGGTTGTGTGGT............................................................................................................ 21 1 1 1.00 1 1 0
...........................................................GGTAGTAGGTTGTGTGGTTA.......................................................................................................... 20 1 1 1.00 1 0 1
...................................................AGGAATGAGGTAGTAGGTTGTGTGG............................................................................................................. 25 3 1 1.00 1 0 1
.....................................................TAATGAGGTAGTAGGTTGTGTGGT............................................................................................................ 24 3 1 1.00 1 1 0
.........................................................GAGGTAGTAGGTTGTGTGGTTTCGTA...................................................................................................... 26 3 1 1.00 1 0 1
....................................................GGAATGAGGTAGTAGGTTGTGTGGTT........................................................................................................... 26 2 1 1.00 1 0 1
........................................................TGAGGGAGTAGGTTGTGTGGT............................................................................................................ 21 1 1 1.00 1 1 0
........................................................TGAGGTAGTAGGCTGTGTGGT............................................................................................................ 21 1 1 1.00 1 0 1
......................................................GGTGAGGTAGTAGGTTGTGTGGT............................................................................................................ 23 0 1 1.00 1 0 1
.................................................ATCGGAATGAGGTAGTAGGTTGTGTGGTT........................................................................................................... 29 3 1 1.00 1 0 1
........................................................TGAGGTAGTAGGTTGTGTGGCTT.......................................................................................................... 23 1 1 1.00 1 0 1
........................................................TGAGGTAGTGGGTTGTGTGGT............................................................................................................ 21 1 1 1.00 1 0 1
.........................................................GAGGTAGTAGGTTGTGTGGTTT.......................................................................................................... 22 0 1 1.00 1 0 1
..............................................................................TCAGGGCAGCGGTGTCGCCCCTAT................................................................................... 24 2 1 1.00 1 1 0
........................................................TGAGGTAGCAGGTTGTGTGG............................................................................................................. 20 1 3 1.00 3 3 0
........................................................TGAGGTAGTTGGTTGTGTGGT............................................................................................................ 21 1 1 1.00 1 1 0
........................................................TGAGGTAGTAGGTTGTGTGGTTTC......................................................................................................... 24 0 1 1.00 1 0 1
........................................................TGAGGTAGTTGGTTGTGTGG............................................................................................................. 20 1 1 1.00 1 0 1
........................................................TGGGGTAGTAGGTTGTGTGGTT........................................................................................................... 22 1 1 1.00 1 0 1
.......................................................ATGAGGTAGTAGGTTGTGT............................................................................................................... 19 1 2 1.00 2 0 2
..................................................TCGGAATGAGGTAGTAGGTTGTGTGGG............................................................................................................ 27 3 1 1.00 1 0 1
............................................................GTAGTAGGTTGTGTGGTT........................................................................................................... 18 0 1 1.00 1 1 0
........................................................TGAGGTAGTAGGTTGCGTGG............................................................................................................. 20 1 1 1.00 1 1 0
........................................................TGAGGGAGTAGGTTGTGTGGTA........................................................................................................... 22 2 3 0.67 2 1 1
........................................................TGAGGCAGTAGGTTGTGTGG............................................................................................................. 20 1 2 0.50 1 1 0
.........................................................GAGGTAGTAGGTTGTGTGGTA........................................................................................................... 21 1 2 0.50 1 0 1
..................................................TCGGAATGAGGTAGTAGGTTGTATGGT............................................................................................................ 27 3 2 0.50 1 0 1
.......................................................ATGAGGTAGTAGGTTGTGTGGTA........................................................................................................... 23 2 2 0.50 1 0 1
.......................................................ATGAGGTGGTAGGTTGTGTGGTTA.......................................................................................................... 24 3 2 0.50 1 0 1
........................................................TGAGGTAGTAGGTTGTATGGTCGC......................................................................................................... 24 3 2 0.50 1 0 1
........................................................TGAGGTAGTAGGTTGTCTGGT............................................................................................................ 21 1 2 0.50 1 1 0
........................................................TGAGGTAGTAGGTTGTGTGGTTTTTAG...................................................................................................... 27 3 2 0.50 1 0 1
....................................................TGTGTGAGGTAGTAGGTTGTATGG............................................................................................................. 24 3 5 0.40 2 0 2
........................................................TGAGGTAGGAGGTTGTGTGGT............................................................................................................ 21 1 3 0.33 1 1 0
........................................................TGAGGTAGTAGTTTGTGT............................................................................................................... 18 1 6 0.33 2 2 0
........................................................TGAGGTAGGAGGTTGTGTGG............................................................................................................. 20 1 4 0.25 1 1 0
........................................................TGAGGGAGTAGGTTGTGTG.............................................................................................................. 19 1 5 0.20 1 0 1
.........................................................GAGGTAGTAGGTTGT................................................................................................................. 15 0 8 0.13 1 0 1
............................................................GAAGTAGGTTGTGTGGT............................................................................................................ 17 1 10 0.10 1 1 0

Anti-sense strand reads

CGCCGGCTCCGGGACCCGTCCGTCCCGACCCGTGTCCGCCACGCCCGTGGAGCCCCACTCCATCATCCAACACACCAAAGTCCCGTCGCCACAGCGGGGAGTCGTCTATTGATATGTCGGATGACGGAAGGGGCTCCCCAGGTCACCGTACCGGCGGGCCCGCCACACCGGGCCCGTGTTGTTCT
***********************************.((.((..((((.((((((((.(((((((((((((((((((((((((((..(((....))))))).....)).))))))))))))))))))))))))))))).)))).)).))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:57 AM