ID:

ocu-let-7a-2

 Coordinate:

chr1:95875266-95875361 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.6 -39.0 -39.0
mature
  1. chr1:71563893-71563912 +
  2. chr1:95875282-95875301 +
  3. chrUn0230:73632-73651 +
star

Sense Strand Reads

ACTAACTGGTAATTTCATTACTTAAGAAATGGTATTTCCAGCCATTGTGACTGCATGTTCCCAGGTTGAGGTAGTAGGTTGTATAGTTTAGAATTACATCAAGGGAGATAACTGTACAACCTCCTAGCTTTCCTTGGGTCTTGCACAAAACAACATGACGAGAACGATCTTGATCCCTCCAGGCCTTTTTTTCCTA
***********************************.........((((...((((....((((((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).)))..))))))...))))....))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
..................................................................TGAGGTAGTAGGTTGTATAG.............................................................................................................. 20 0 3 163.67 491 307 184
..................................................................TGAGGTAGTAGGTTGTATAGT............................................................................................................. 21 0 3 72.67 218 166 52
..................................................................TGAGGTAGTAGGTTGTATA............................................................................................................... 19 0 3 35.33 106 71 35
..................................................................TGAGGTAGTAGGTTGTATAGTT............................................................................................................ 22 0 3 33.67 101 35 66
..................................................................TGAGGTAGGAGGTTGTATAG.............................................................................................................. 20 1 3 31.00 93 46 47
..................................................................TGAGGTAGGAGGTTGTATAGT............................................................................................................. 21 1 3 23.33 70 30 40
..................................................................TGAGGTAGTAGGTTGTAT................................................................................................................ 18 0 4 10.75 43 13 30
...................................................................GAGGTAGTAGGTTGTATAG.............................................................................................................. 19 0 3 8.67 26 24 2
..................................................................TGAGGTAGTAGGTTGTATAGTTA........................................................................................................... 23 1 3 7.00 21 21 0
..................................................................TGAGGTAGTAGGTTGTATAGTTT........................................................................................................... 23 0 3 4.67 14 11 3
..................................................................TGAGGTAGGAGGTTGTATAGTT............................................................................................................ 22 1 3 4.33 13 4 9
...................................................................GAGGTAGTAGGTTGTATA............................................................................................................... 18 0 3 4.00 12 10 2
...................................................................GAGGTAGTAGATTGTATAGTTTCGTA....................................................................................................... 26 3 2 3.50 7 7 0
...................................................................GAGGTAGTAGGTTGTATAGT............................................................................................................. 20 0 3 3.33 10 9 1
...................................................................GAGGTAGTAGGTTGTATAGTT............................................................................................................ 21 0 3 2.67 8 1 7
..................................................................TGAGGTAGGAGGTTGTAT................................................................................................................ 18 1 8 2.38 19 6 13
..................................................................TGAGGTAGGAGGTTGTATA............................................................................................................... 19 1 3 2.33 7 4 3
..................................................................TGAGGTAGTAGGTTGTATAGTA............................................................................................................ 22 1 3 2.00 6 6 0
...................................................................GAGGTAGGAGGTTGTATAG.............................................................................................................. 19 1 3 2.00 6 6 0
..................................................................TGAGGTAGTAGGTTGTATAGTTAA.......................................................................................................... 24 1 1 2.00 2 2 0
..................................................................TGAGGTAGTAGGTTGTATAGTTTA.......................................................................................................... 24 0 1 2.00 2 2 0
..................................................................TGAGGTAGTAGGTTGT.................................................................................................................. 16 0 5 1.80 9 0 9
..................................................................TGAGGTAGTAGGTTGTATAGTTCGTA........................................................................................................ 26 3 2 1.50 3 3 0
...................................................................GAGGTAGGAGGTTGTATAGT............................................................................................................. 20 1 3 1.33 4 4 0
..................................................................TGAGGGAGTAGGTTGTATAG.............................................................................................................. 20 1 3 1.33 4 3 1
..................................................................TGAGGTAGTAGGTTGTATAGTTAAA......................................................................................................... 25 2 2 1.00 2 2 0
..................................................................TGAGGTAGGAGGTTGTATAGTA............................................................................................................ 22 2 3 1.00 3 1 2
................................................................ATTGAGGTAGTAGGTTGTATAG.............................................................................................................. 22 1 1 1.00 1 1 0
..................................................................TGAGGTAGTAGATTGTATAGTTAAGA........................................................................................................ 26 2 1 1.00 1 1 0
.................................................................TTGAGGTAGTAGGTTGTATAG.............................................................................................................. 21 0 1 1.00 1 1 0
..................................................................TGAGGTAGTAGGTTGTATAGTTAAAAAAT..................................................................................................... 29 3 1 1.00 1 1 0
..................................................................TGAGGGAGTAGGTTGTATAGTT............................................................................................................ 22 1 3 1.00 3 1 2
...................................................................GAGGTAGTAGGTTGTATAGTTTCGTA....................................................................................................... 26 2 1 1.00 1 1 0
..............................................................AAATTGAGGTAGTAGGTTGTATAG.............................................................................................................. 24 2 1 1.00 1 1 0
..................................................................TGAGGTAGTCGGTTGTATAG.............................................................................................................. 20 1 3 0.67 2 1 1
..................................................................TGAGGGAGTAGGTTGTATAGT............................................................................................................. 21 1 3 0.67 2 2 0
......................................................................GTAGTAGGTTGTATAGT............................................................................................................. 17 0 3 0.67 2 0 2
..................................................................TGAGGCAGTAGGTTGTATAG.............................................................................................................. 20 1 3 0.67 2 1 1
..................................................................TGAGGTAGTAGATTGTATAGTTTATC........................................................................................................ 26 3 2 0.50 1 1 0
...............................................................CGTTGAGGTAGTAGGTTGTAT................................................................................................................ 21 1 2 0.50 1 1 0
..............................................................................................................ACTATACGGCCTCCTAGCTTT................................................................. 21 3 9 0.44 4 0 4
..................................................................TGAGGCAGTAGGTTGTATAGT............................................................................................................. 21 1 3 0.33 1 1 0
......................................................................GTAGTAGGTTGTATAG.............................................................................................................. 16 0 3 0.33 1 0 1
..................................................................TGAGGTAGTAGGTTGTATAGTTTCCT........................................................................................................ 26 3 3 0.33 1 1 0
..................................................................TGAGGTAGTAGGTTGTATAGA............................................................................................................. 21 1 3 0.33 1 1 0
.....................................................................GGTAGTAGGTTGTATAGTTT........................................................................................................... 20 0 3 0.33 1 1 0
..................................................................TGAGGTAGTAGATTGTATAGTTAA.......................................................................................................... 24 2 3 0.33 1 1 0
..................................................................TGAGGTAGTAGGTTGTATAGTTTTG......................................................................................................... 25 1 3 0.33 1 1 0
..................................................................TGAGGTAGGAGGTTGTATAGTTT........................................................................................................... 23 1 3 0.33 1 0 1
...................................................................GAGGCAGTAGGTTGTATAGT............................................................................................................. 20 1 3 0.33 1 1 0
..................................................................TGAGGTAGTACGTTGTATAGT............................................................................................................. 21 1 3 0.33 1 1 0
....................................................................AGGTAGTAGGTTGTATAGTT............................................................................................................ 20 0 3 0.33 1 0 1
..................................................................TGAGGCAGTAGGTTGTATAGTT............................................................................................................ 22 1 3 0.33 1 0 1
..................................................................TGAGGTAGTAGATTGTATAGTTCAC......................................................................................................... 25 3 3 0.33 1 1 0
..................................................................TGAGGTAGGAGGTTTTATAGTTT........................................................................................................... 23 2 3 0.33 1 0 1
..................................................................TGAGGTAGTAGGTTGTAAAG.............................................................................................................. 20 1 3 0.33 1 1 0
...................................................................GATGTAGTAGGTTGTATAG.............................................................................................................. 19 1 3 0.33 1 1 0
..................................................................TGAGGTAGTGGGTTGTATAG.............................................................................................................. 20 1 3 0.33 1 0 1
..................................................................TGAGGTAGTAGGTTGTATAGTTC........................................................................................................... 23 1 3 0.33 1 1 0
..................................................................TTAGGTAGTAGGTTGTATAG.............................................................................................................. 20 1 3 0.33 1 1 0
..................................................................TGAGGTAGTAGGTTGTATAGTTAGAA........................................................................................................ 26 3 3 0.33 1 1 0
...................................................................GAGGTAGAAGGTTGTATAGTT............................................................................................................ 21 1 3 0.33 1 1 0
...................................................................GAGGTAGTAGGTTGTAAAGT............................................................................................................. 20 1 3 0.33 1 1 0
..................................................................TGAGGTAGCAGGTTGTATAG.............................................................................................................. 20 1 4 0.25 1 1 0
..................................................................TGAGGTAGTAGGTTGTA................................................................................................................. 17 0 4 0.25 1 0 1
..................................................................TGAGGTAGTAGGTTGTATAGTTGCC......................................................................................................... 25 3 4 0.25 1 1 0
..................................................................TGAGGTAGGAGGTTGTATAGA............................................................................................................. 21 2 4 0.25 1 1 0
...................................................................GAGGAAGTAGGTTGTATAGT............................................................................................................. 20 1 4 0.25 1 0 1
...................................................................GAGGTAGGAGGTTGTATA............................................................................................................... 18 1 4 0.25 1 1 0
..................................................................TGAGGTAGTAGGTTGCATAGT............................................................................................................. 21 1 4 0.25 1 1 0
...................................................................GAGGTAGTAGGTTGTAT................................................................................................................ 17 0 4 0.25 1 1 0
..................................................................TGAGGTAGTAGGCTGTATAG.............................................................................................................. 20 1 4 0.25 1 1 0
..............................................................ACGCTGAGGTAGTAGATTGTATAG.............................................................................................................. 24 3 4 0.25 1 1 0
.....................................................................GGTAGTAGGTTGTAT................................................................................................................ 15 0 4 0.25 1 0 1
..................................................................TGGGGTAGTAGGTTGTATAG.............................................................................................................. 20 1 4 0.25 1 1 0
..................................................................TGAGGAAGTAGGTTGTATAGT............................................................................................................. 21 1 4 0.25 1 1 0
..................................................................TGAGGAAGTAGGTTGTATAG.............................................................................................................. 20 1 4 0.25 1 1 0
..................................................................TGAGGTAGGAGGTTGCATAGT............................................................................................................. 21 2 5 0.20 1 1 0
..................................................................TGAGGTAGTAGGTTGTACAG.............................................................................................................. 20 1 5 0.20 1 1 0
.......................................................................TAGTAGGTTGTATAG.............................................................................................................. 15 0 5 0.20 1 1 0
..................................................................TGAGGTAGTAGCTTGTATAG.............................................................................................................. 20 1 5 0.20 1 1 0
..................................................................TGAGGTAGTAGGTTCTATA............................................................................................................... 19 1 5 0.20 1 0 1
..................................................................TGAGGTAGTAGGGTGTAT................................................................................................................ 18 1 5 0.20 1 1 0
...................................................................GAGGAAGTAGGTTGTATAG.............................................................................................................. 19 1 5 0.20 1 1 0
..................................................................TGTGGTAGGAGGTTGTATAGT............................................................................................................. 21 2 5 0.20 1 1 0
..................................................................TGAGGGAGTAGGTTGTAT................................................................................................................ 18 1 11 0.18 2 1 1
..................................................................TGAGGTTGGAGGTTGTATAG.............................................................................................................. 20 2 6 0.17 1 1 0
..................................................................TGAGGTAGGAGGCTGTATAGT............................................................................................................. 21 2 6 0.17 1 1 0
..................................................................TGAGGGAGTAGGTTGTATA............................................................................................................... 19 1 6 0.17 1 0 1
........................................................................AGTAGGTTGTATAGT............................................................................................................. 15 0 6 0.17 1 1 0
...................................................................GGGGTAGTAGGTTGTATA............................................................................................................... 18 1 6 0.17 1 1 0
..................................................................TGAGGTAGTAGGTTGTAA................................................................................................................ 18 1 7 0.14 1 1 0
..................................................................TGAGGCAGGAGGTTGTATAGT............................................................................................................. 21 2 7 0.14 1 1 0
...............................................................TACTGAGGTAGTAGGTTGTATAG.............................................................................................................. 23 3 7 0.14 1 1 0
.............................................................CAGTTTGAGGTAGTAGTTTG................................................................................................................... 20 2 8 0.13 1 0 1
...................................................................GAGGTAGTAGGTTGT.................................................................................................................. 15 0 8 0.13 1 1 0
..................................................................TGAGGTAGTAGGTTACATAG.............................................................................................................. 20 2 9 0.11 1 1 0
...................................................................GAGGTAGGAGGGTGTATAGT............................................................................................................. 20 2 13 0.08 1 1 0
..................................................................TGAGGTAGGAGGTTGTATAA.............................................................................................................. 20 2 14 0.07 1 0 1
..................................................................TGAGGGAGGAGGTTGTATAG.............................................................................................................. 20 2 20 0.05 1 1 0

Anti-sense strand reads

TGATTGACCATTAAAGTAATGAATTCTTTACCATAAAGGTCGGTAACACTGACGTACAAGGGTCCAACTCCATCATCCAACATATCAAATCTTAATGTAGTTCCCTCTATTGACATGTTGGAGGATCGAAAGGAACCCAGAACGTGTTTTGTTGTACTGCTCTTGCTAGAACTAGGGAGGTCCGGAAAAAAAGGAT
***********************************.........((((...((((....((((((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).)))..))))))...))))....))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:28 AM