ID:

ocu-let-7a-1

 Coordinate:

chr1:71563881-71563974 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.8 -42.6 -42.4
mature
  1. chr1:71563893-71563912 +
  2. chr1:95875282-95875301 +
  3. chrUn0230:73632-73651 +
star
  1. chr1:71563944-71563963 +
  2. chrUn0230:73680-73699 +

Sense Strand Reads

TCCTATGCTGCGCAACGGTGGTTCCTTTTCAACGTTCACCCTGGGTTCTCTTCACTGTGGGATGAGGTAGTAGGTTGTATAGTTTTAGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCCTAAAGTGATAGAAAAGTCTGCATGCAGGTGGCCTCTTAGAAAATCATTAATTGTACAGT
***********************************************.((((((((.(((((.(((((((((((((((((((((.....(((...((((....)))).))))))))))))))))))))))))))))).))))).))).********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
..............................................................TGAGGTAGTAGGTTGTATAG................................................................................................................ 20 0 3 163.67 491 307 184
..............................................................TGAGGTAGTAGGTTGTATAGT............................................................................................................... 21 0 3 72.67 218 166 52
..............................................................TGAGGTAGTAGGTTGTATA................................................................................................................. 19 0 3 35.33 106 71 35
.............................................................ATGAGGTAGTAGGTTGTATAG................................................................................................................ 21 0 1 34.00 34 25 9
..............................................................TGAGGTAGTAGGTTGTATAGTT.............................................................................................................. 22 0 3 33.67 101 35 66
..............................................................TGAGGTAGGAGGTTGTATAG................................................................................................................ 20 1 3 31.00 93 46 47
..............................................................TGAGGTAGGAGGTTGTATAGT............................................................................................................... 21 1 3 23.33 70 30 40
.............................................................ATGAGGTAGTAGGTTGTATGG................................................................................................................ 21 1 2 13.00 26 19 7
.............................................................ATGAGGTAGTAGGTTGTATAGT............................................................................................................... 22 0 1 13.00 13 13 0
..............................................................TGAGGTAGTAGGTTGTAT.................................................................................................................. 18 0 4 10.75 43 13 30
...............................................................GAGGTAGTAGGTTGTATAG................................................................................................................ 19 0 3 8.67 26 24 2
.............................................................ATGAGGTAGGAGGTTGTATAG................................................................................................................ 21 1 1 7.00 7 5 2
..............................................................TGAGGTAGTAGGTTGTATAGTTA............................................................................................................. 23 1 3 7.00 21 21 0
.............................................................ATGAGGTAGTAGGTTGTATAGTT.............................................................................................................. 23 0 1 5.00 5 1 4
.............................................................ATGAGGTAGTAGGTTGTATA................................................................................................................. 20 0 1 5.00 5 3 2
..............................................................TGAGGTAGTAGGTTGTATAGTTT............................................................................................................. 23 0 3 4.67 14 11 3
..............................................................TGAGGTAGGAGGTTGTATAGTT.............................................................................................................. 22 1 3 4.33 13 4 9
...............................................................GAGGTAGTAGGTTGTATA................................................................................................................. 18 0 3 4.00 12 10 2
.............................................................ATGAGGTAGTAGGTTGTATGGT............................................................................................................... 22 1 2 4.00 8 8 0
.................................................................................................................CTATACAATCTACTGTCTTTCT........................................................... 22 1 2 3.50 7 0 7
...............................................................GAGGTAGTAGGTTGTATAGT............................................................................................................... 20 0 3 3.33 10 9 1
............................................................AATGAGGTAGTAGGTTGTATAG................................................................................................................ 22 1 1 3.00 3 0 3
.............................................................ATGAGGTAGTAGGTTGTAT.................................................................................................................. 19 0 1 3.00 3 3 0
...............................................................GAGGTAGTAGGTTGTATAGTT.............................................................................................................. 21 0 3 2.67 8 1 7
..............................................................TGAGGTAGGAGGTTGTAT.................................................................................................................. 18 1 8 2.38 19 6 13
..............................................................TGAGGTAGGAGGTTGTATA................................................................................................................. 19 1 3 2.33 7 4 3
..............................................................TGAGGTAGTAGGTTGTATAGTA.............................................................................................................. 22 1 3 2.00 6 6 0
..............................................................TGAGGTAGTAGGTTGTATAGTTTTA........................................................................................................... 25 0 1 2.00 2 2 0
...............................................................GAGGTAGGAGGTTGTATAG................................................................................................................ 19 1 3 2.00 6 6 0
..............................................................TGAGGTAGTAGGTTGT.................................................................................................................... 16 0 5 1.80 9 0 9
.................................................................................................................CTATACAATCTACTGTCTTT............................................................. 20 0 2 1.50 3 2 1
.............................................................ATGAGGTAGTAGGTTGTATG................................................................................................................. 20 1 2 1.50 3 3 0
............................................................AATGAGGTAGTAGGTTGTATG................................................................................................................. 21 2 2 1.50 3 0 3
..............................................................TGAGGGAGTAGGTTGTATAG................................................................................................................ 20 1 3 1.33 4 3 1
...............................................................GAGGTAGGAGGTTGTATAGT............................................................................................................... 20 1 3 1.33 4 4 0
...........................................................GAATGAGGTAGTAGGTTGTATAGT............................................................................................................... 24 1 1 1.00 1 1 0
.............................................................ATGAGGCAGTAGGTTGTATAG................................................................................................................ 21 1 1 1.00 1 1 0
...........................................................GAATGAGGTAGTAGGTTGTATA................................................................................................................. 22 1 1 1.00 1 1 0
..............................................................TGAGGTAGGAGGTTGTATAGTA.............................................................................................................. 22 2 3 1.00 3 1 2
..............................................................TGAGGGAGTAGGTTGTATAGTT.............................................................................................................. 22 1 3 1.00 3 1 2
.................................................................................................................CTATACAATCTACTGTCTTTC............................................................ 21 0 2 1.00 2 2 0
.............................................................ATGAGGTAGGAGGTTGTATAGT............................................................................................................... 22 1 1 1.00 1 1 0
............................................................AATGAGGTAGTAGGTTGTATGG................................................................................................................ 22 2 2 1.00 2 2 0
............................................................AATGAGGTAGTAGGTTGTATA................................................................................................................. 21 1 1 1.00 1 1 0
...........................................................GAATGAGGTAGTAGGTTGTATAG................................................................................................................ 23 1 1 1.00 1 1 0
............................................................AATGAGGTAGGAGGTTGTATAGT............................................................................................................... 23 2 1 1.00 1 1 0
..............................................................TGAGGTAGTAGGTTGTATAGTTTCAC.......................................................................................................... 26 2 1 1.00 1 1 0
.............................................................ATGAGGTAGTAGGTTGTGT.................................................................................................................. 19 1 2 1.00 2 2 0
..............................................................TGAGGTAGTAGGTTGTATAGTTAAA........................................................................................................... 25 2 2 1.00 2 2 0
.............................................................ATGAGGTAGTAGGTTGTATGGTT.............................................................................................................. 23 1 2 1.00 2 0 2
.............................................................ATGAGGTAGTAGGTTGTATAGTTTTAGG......................................................................................................... 28 0 1 1.00 1 1 0
.............................................................ATGAGGTAGGAGGTTGTATAGTT.............................................................................................................. 23 1 1 1.00 1 1 0
.............................................................ATGAGGGAGTAGGTTGTATAGT............................................................................................................... 22 1 1 1.00 1 1 0
.............................................................ATGAGGTAGTAGGTTGTATAGTCATC........................................................................................................... 26 3 1 1.00 1 1 0
............................................................AATGAGGTAGGAGGTTGTATAGTA.............................................................................................................. 24 3 3 0.67 2 0 2
..................................................................GTAGTAGGTTGTATAGT............................................................................................................... 17 0 3 0.67 2 0 2
..............................................................TGAGGTAGTCGGTTGTATAG................................................................................................................ 20 1 3 0.67 2 1 1
..............................................................TGAGGGAGTAGGTTGTATAGT............................................................................................................... 21 1 3 0.67 2 2 0
..............................................................TGAGGCAGTAGGTTGTATAG................................................................................................................ 20 1 3 0.67 2 1 1
..............................................................................................................AAACTATACAATCTACTGTCTT.............................................................. 22 1 2 0.50 1 1 0
............................................................CATGAGGTAGTAGGTTGTATGG................................................................................................................ 22 2 2 0.50 1 1 0
...........................................................GAATGAGGTAGTAGGTTGTATGG................................................................................................................ 23 2 2 0.50 1 1 0
.............................................................ATGAGGTAGAAGGTTGTATAG................................................................................................................ 21 1 2 0.50 1 0 1
.............................................................ATGAGGTAGTAGGTTGTATAGTCTG............................................................................................................ 25 2 2 0.50 1 1 0
............................................................AATGAGGTAGTAGGTTGTATGGTT.............................................................................................................. 24 2 2 0.50 1 0 1
.........................................................GGGGATGAGGTAGTAGGTTGTATGGTTT............................................................................................................. 28 2 2 0.50 1 1 0
..............................................................TGAGGTAGTGGGTTGTATAG................................................................................................................ 20 1 3 0.33 1 0 1
..............................................................TGAGGTAGTAGGTTGTATAGTTTTG........................................................................................................... 25 1 3 0.33 1 1 0
..............................................................TTAGGTAGTAGGTTGTATAG................................................................................................................ 20 1 3 0.33 1 1 0
................................................................AGGTAGTAGGTTGTATAGTT.............................................................................................................. 20 0 3 0.33 1 0 1
...............................................................GAGGTAGAAGGTTGTATAGTT.............................................................................................................. 21 1 3 0.33 1 1 0
..............................................................TGAGGCAGTAGGTTGTATAGT............................................................................................................... 21 1 3 0.33 1 1 0
..................................................................GTAGTAGGTTGTATAG................................................................................................................ 16 0 3 0.33 1 0 1
..............................................................TGAGGCAGTAGGTTGTATAGTT.............................................................................................................. 22 1 3 0.33 1 0 1
............................................................AATGAGGAAGTAGGTTGTATAG................................................................................................................ 22 2 3 0.33 1 0 1
..............................................................TGAGGTAGTAGGTTGTATAGTTTCCT.......................................................................................................... 26 3 3 0.33 1 1 0
..............................................................TGAGGTAGGAGGTTTTATAGTTT............................................................................................................. 23 2 3 0.33 1 0 1
..............................................................TGAGGTAGTAGGTTGTATAGTTC............................................................................................................. 23 1 3 0.33 1 1 0
..............................................................TGAGGTAGGAGGTTGTATAGTTT............................................................................................................. 23 1 3 0.33 1 0 1
.............................................................ATGAGGTAGTAGGCTGTATGG................................................................................................................ 21 2 3 0.33 1 1 0
...............................................................GAGGCAGTAGGTTGTATAGT............................................................................................................... 20 1 3 0.33 1 1 0
..............................................................TGAGGTAGTAGGTTGTATAGTTAGAA.......................................................................................................... 26 3 3 0.33 1 1 0
..............................................................TGAGGTAGTACGTTGTATAGT............................................................................................................... 21 1 3 0.33 1 1 0
...............................................................GAGGTAGTAGGTTGTAAAGT............................................................................................................... 20 1 3 0.33 1 1 0
....................................................................AGTAGGTTGTATAGTTTGAGGT........................................................................................................ 22 2 3 0.33 1 0 1
..............................................................TGAGGTAGTAGGTTGTATAGA............................................................................................................... 21 1 3 0.33 1 1 0
..............................................................TGAGGTAGTAGGTTGTAAAG................................................................................................................ 20 1 3 0.33 1 1 0
...............................................................GATGTAGTAGGTTGTATAG................................................................................................................ 19 1 3 0.33 1 1 0
.................................................................GGTAGTAGGTTGTATAGTTT............................................................................................................. 20 0 3 0.33 1 1 0
..............................................................TGAGGTAGTAGGCTGTATAG................................................................................................................ 20 1 4 0.25 1 1 0
..............................................................TGAGGAAGTAGGTTGTATAG................................................................................................................ 20 1 4 0.25 1 1 0
..............................................................TGAGGTAGTAGGTTGCATAGT............................................................................................................... 21 1 4 0.25 1 1 0
...............................................................GAGGAAGTAGGTTGTATAGT............................................................................................................... 20 1 4 0.25 1 0 1
...............................................................GAGGTAGGAGGTTGTATA................................................................................................................. 18 1 4 0.25 1 1 0
..............................................................TGAGGAAGTAGGTTGTATAGT............................................................................................................... 21 1 4 0.25 1 1 0
..............................................................TGAGGTAGCAGGTTGTATAG................................................................................................................ 20 1 4 0.25 1 1 0
.................................................................GGTAGTAGGTTGTAT.................................................................................................................. 15 0 4 0.25 1 0 1
..............................................................TGGGGTAGTAGGTTGTATAG................................................................................................................ 20 1 4 0.25 1 1 0
..............................................................TGAGGTAGTAGGTTGTATAGTTGCC........................................................................................................... 25 3 4 0.25 1 1 0
...............................................................GAGGTAGTAGGTTGTAT.................................................................................................................. 17 0 4 0.25 1 1 0
..............................................................TGAGGTAGGAGGTTGTATAGA............................................................................................................... 21 2 4 0.25 1 1 0
..............................................................TGAGGTAGTAGGTTGTA................................................................................................................... 17 0 4 0.25 1 0 1
..............................................................TGAGGTAGTAGGTTGTACAG................................................................................................................ 20 1 5 0.20 1 1 0
..............................................................TGAGGTAGTAGGTTCTATA................................................................................................................. 19 1 5 0.20 1 0 1
..............................................................TGAGGTAGGAGGTTGCATAGT............................................................................................................... 21 2 5 0.20 1 1 0
..............................................................TGAGGTAGTAGGGTGTAT.................................................................................................................. 18 1 5 0.20 1 1 0
...............................................................GAGGAAGTAGGTTGTATAG................................................................................................................ 19 1 5 0.20 1 1 0
..............................................................TGTGGTAGGAGGTTGTATAGT............................................................................................................... 21 2 5 0.20 1 1 0
..............................................................TGAGGTAGTAGCTTGTATAG................................................................................................................ 20 1 5 0.20 1 1 0
...................................................................TAGTAGGTTGTATAG................................................................................................................ 15 0 5 0.20 1 1 0
..............................................................TGAGGGAGTAGGTTGTAT.................................................................................................................. 18 1 11 0.18 2 1 1
..............................................................TGAGGGAGTAGGTTGTATA................................................................................................................. 19 1 6 0.17 1 0 1
....................................................................AGTAGGTTGTATAGT............................................................................................................... 15 0 6 0.17 1 1 0
...............................................................GGGGTAGTAGGTTGTATA................................................................................................................. 18 1 6 0.17 1 1 0
..............................................................TGAGGTTGGAGGTTGTATAG................................................................................................................ 20 2 6 0.17 1 1 0
..............................................................TGAGGTAGGAGGCTGTATAGT............................................................................................................... 21 2 6 0.17 1 1 0
..............................................................TGAGGTAGTAGGTTGTAA.................................................................................................................. 18 1 7 0.14 1 1 0
...........................................................TACTGAGGTAGTAGGTTGTATAG................................................................................................................ 23 3 7 0.14 1 1 0
..............................................................TGAGGCAGGAGGTTGTATAGT............................................................................................................... 21 2 7 0.14 1 1 0
...............................................................GAGGTAGTAGGTTGT.................................................................................................................... 15 0 8 0.13 1 1 0
..............................................................TGAGGTAGTAGGTTACATAG................................................................................................................ 20 2 9 0.11 1 1 0
...............................................................GAGGTAGGAGGGTGTATAGT............................................................................................................... 20 2 13 0.08 1 1 0
..............................................................TGAGGTAGGAGGTTGTATAA................................................................................................................ 20 2 14 0.07 1 0 1
..............................................................TGAGGGAGGAGGTTGTATAG................................................................................................................ 20 2 20 0.05 1 1 0
..............................AACGTTCTCCCTGGGTTCC................................................................................................................................................. 19 2 20 0.05 1 1 0

Anti-sense strand reads

AGGATACGACGCGTTGCCACCAAGGAAAAGTTGCAAGTGGGACCCAAGAGAAGTGACACCCTACTCCATCATCCAACATATCAAAATCCCAGTGTGGGTGGTGACCCTCTATTGATATGTTAGATGACAGAAAGGATTTCACTATCTTTTCAGACGTACGTCCACCGGAGAATCTTTTAGTAATTAACATGTCA
**********************************************.((((((((.(((((.(((((((((((((((((((((.....(((...((((....)))).))))))))))))))))))))))))))))).))))).))).*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:27 AM