ID:

nve-mir-9467

 Coordinate:

scaffold_64:126695-126776 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.3 -29.3 -29.0 -24.7
mature
  1. scaffold_1840:4197-4220 +
  2. scaffold_365:197788-197811 -
  3. scaffold_250:145707-145730 -
  4. scaffold_64:111412-111435 +
  5. scaffold_64:126750-126773 +
  6. scaffold_42:1194660-1194683 -
  7. scaffold_6:1476112-1476135 +
star
  1. scaffold_491:90321-90344 +
  2. scaffold_224:49666-49689 +
  3. scaffold_64:111384-111407 +
  4. scaffold_64:126722-126745 +

Sense Strand Reads

ggggtaaaagtttcaagagttgaaaccccacaccaacgtggtgattgcagccttcaccacggacgggctaggggaacgttgtctgtatcacgacacggacagcgtcattttcttacaccgccctggagagtggaaaccgccgctcgggaactatctaggagacctgacgagcgagttggagc
**************************************************************.(((..((((((((((((((((((........)))))))))))...)))))))..)))........(((((......)))))************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039726
"Blastula, untreated"		 SRR039754
"Adult males, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039729
"Blastula, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039731
"Adult females, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039755
"Adult males, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"
.........................................................................................................CATTTTCTTACACCGCCCTGGAGA..................................................... 24 0 7 10.00 70 5 3 7 6 4 4 4 3 3 3 4 4 5 3 3 4 3 2
.........................................................................................................CATTTTCTTACACCGCCCTGGAG...................................................... 23 0 7 3.57 25 5 1 3 3 1 1 4 1 1 1 0 2 1 0 1 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGGAGAGT................................................... 26 0 7 3.00 21 3 2 2 3 3 2 1 1 1 2 0 1 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGGAGAG.................................................... 25 0 7 2.14 15 3 2 1 0 2 3 0 0 2 0 0 0 0 1 1 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGGAGAGTG.................................................. 27 0 7 1.86 13 2 2 0 1 1 0 1 3 1 0 1 1 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCACACCAACGTGG............................................................................................................................................. 28 0 16 1.56 25 0 5 4 1 3 0 0 1 1 0 1 2 0 3 1 2 0 1
.............CAAGAGTTGAAACCCCACACCAACGTGGT............................................................................................................................................ 29 0 16 0.88 14 0 1 0 3 3 0 0 2 2 0 0 2 0 1 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGGA....................................................... 22 0 7 0.86 6 1 0 2 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0
.............................................................................GTTGTCTGTATCACGACACGGACA................................................................................. 24 0 4 0.50 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GACACGGACAGCGTCATTTTCTTACACCG.............................................................. 29 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGGAGAGTGGA................................................ 29 0 6 0.50 3 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCC............................................................ 17 0 9 0.44 4 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0
.........................................................................................................CATTTTCTTACACCGCCCTGGCG...................................................... 23 1 7 0.43 3 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................AAACCCCACACCAACGTGGTGATTGCAGC................................................................................................................................... 29 0 6 0.33 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGTATCACGACACGGACAGCGTTTTT......................................................................... 26 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................TGTATCACGACACGGACAGCGTTTTTT........................................................................ 27 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................TTGTCTGTATCACGACACGGACAGCGTC............................................................................ 28 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TATTTTCTTACACCGCCCTGGAGA..................................................... 24 1 7 0.29 2 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0
....................................................................................................................................................................TGACGAGCGAGTTGGAGC 18 0 20 0.25 5 0 1 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TATCACGACACGGACAGCGT............................................................................. 20 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCACACCAACGTGGTT........................................................................................................................................... 30 1 17 0.18 3 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0
....................TGAAACCCCACACCAACGTGGTGATTGCATA................................................................................................................................... 31 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................AAACCCCACACCAACGTGGTGATTGCAG.................................................................................................................................... 28 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TGAAACCCCACACCACCGTGGTGATTGCAGC................................................................................................................................... 31 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ACGTTGTCTGTATCACGACACGGA................................................................................... 24 0 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTTGAGA..................................................... 24 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................CATTTTATTACACCGACCTGGCGAGT................................................... 26 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCTCATTTTCTTACACCGCCCTGGAGA..................................................... 27 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGTCCTGGTGAGTG.................................................. 27 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTGCTTACACCGCCCTGGAGA..................................................... 24 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTATTACACCGCCGTGGAGAG.................................................... 25 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGGC....................................................... 22 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................CCTTTTCTTACACCGCCCTGGCGA..................................................... 24 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................CATTTTCGTACACCGCCCTGGAG...................................................... 23 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CATTTCTTACACCGCCCTGGAGA..................................................... 23 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTTTCTTACACCGCCCTGGAGA..................................................... 22 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCTCTGGAGA..................................................... 24 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TATTTTCTTACACCGCCCTGGA....................................................... 22 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................CATTTTCTGACACCGCCCTGGAGAGTG.................................................. 27 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGGCGA..................................................... 24 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGGTGAT.................................................... 25 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGGAGAGTTT................................................. 28 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................CAGTTTCTTACACCGCCCTGGAGAG.................................................... 25 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................AATTTTCTTACACCGCCCTGGAGA..................................................... 24 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CAGTTTCTTACACCGCCCTGGAGATTG.................................................. 27 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCGGGAGA..................................................... 24 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................TTTCTTACACCGCCCTGGAGA..................................................... 21 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TTCTTACACCGCCCTGGAGA..................................................... 20 0 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGCAG...................................................... 23 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTTCACCGCCCTGGAGAG.................................................... 25 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACACCGCCCTGGAGCGTG.................................................. 27 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTGCACCGCCCTGGAG...................................................... 23 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTGCACCGCCCTGGAGAGTG.................................................. 27 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCACACCAACGTGGA............................................................................................................................................ 29 1 16 0.13 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTCTCTTACACCGCC............................................................ 17 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTGCTCCGCCCTGGGG...................................................... 23 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CATTTTCTTACAACGCCCTGGAGA..................................................... 24 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCACACCAACGTGGTGA.......................................................................................................................................... 31 0 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTGGAAACCCCACACCAACGTGGCGA.......................................................................................................................................... 31 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCACACCAAC................................................................................................................................................. 24 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............CAAGAGTTGAAACTCCACACCAACGTGGT............................................................................................................................................ 29 1 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCACACCAACGTG.............................................................................................................................................. 27 0 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCACACCAACGTGGG............................................................................................................................................ 29 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCACACCAA.................................................................................................................................................. 23 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTAGAAACCCCACACCAACGCGCT............................................................................................................................................ 29 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCACACC.................................................................................................................................................... 21 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............CAAGAGTCGAAACCCCACACAAACGTGGT............................................................................................................................................ 29 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AAGAGTTGAAACCCCACACCAACGTGGT............................................................................................................................................ 28 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAATTCCACACCAACGTGG............................................................................................................................................. 28 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCATACCAACGTGG............................................................................................................................................. 28 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............CAAGAGTTGAAACCCCACACCAACGTT.............................................................................................................................................. 27 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............CAAGAGTTGAAACCCCACACCAACGTGGAT........................................................................................................................................... 30 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............CAAGAGTTGAAACCGCACACCAACGTGG............................................................................................................................................. 28 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GGAGACCTGACGAGCGAGTTGG... 22 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GGAGACCTGACGAGCGAGGTGGC.. 23 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGATGAGCGAGTTGGAGC 18 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ggggtTTTTgtttGTTgTgttgTTTGGGGTGTGGTTGgtggtgTttgGTgGGttGTGGTGggTGgggGtTggggTTGgttgtGtgtTtGTGgTGTGggTGTgGgtGTttttGttTGTGGgGGGtggTgTgtggTTTGGgGGgGtGgggTTGtTtGtTggTgTGGtgTGgTgGgTgttggTgG
**************************************.(((..((((((((((((((((((........)))))))))))...)))))))..)))........(((((......)))))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039763
"Metamorphosing individuals, oxidized"		 SRR039755
"Adult males, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039757
"Gastrula, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039731
"Adult females, untreated"		 SRR039758
"Early planula, untreated"
.......................................................................................................................................................ATAGATCCTCTGGACTGCTCGCTCAACCT.. 29 0 17 0.18 3 0 1 0 0 0 0 0 1 1 0 0
..................................................................................................................................................GCTTAATAGATCCTCTGAACTGCTCGCT........ 28 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................GTGCTATGCCTGTCGCAGTAAAAGAAT................................................................... 27 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CCCTTAATAGATCCTCTGAACTGCTCGC......... 28 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................ATAGATCCTCTGTACTGCTCGCTCAACCT.. 29 1 20 0.10 2 0 1 0 0 0 0 0 0 0 1 0
...................................................................GATCCCCTAGCAGCTGACAT............................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................TGGTGCCTGTCACAGTAAAAGAAT................................................................... 24 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................CTGTGCCTGTCACAGTAACAGAAT................................................................... 24 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................GATAGATCCTCTGTACTGCTCGCTCAACCT.. 30 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TAGATCCTCTGTACTGCTCGCACAACCT.. 28 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATAGATCCTCTGCACTGCTCGCTCAACCT.. 29 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................TAGCTCCTCTGCACTGTTCGCTCAACCT.. 28 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Generated: 08/21/2014 at 10:40 AM