ID:

nve-mir-9463

 Coordinate:

scaffold_94:717542-717612 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.1 -29.8 -29.8

Sense Strand Reads

CATTACTGTCTACCTCTGTGGCAGTTGTGTAATACCTGGAGGGAAATTAAATGAGTTCTGTAGACTCACTATGGTTAGCTGGTGGGCTCCATCAGAATAACTGAATCTCAGAACTACAGTTGCAGTATTTTCCTAAAAGAACGCAAATGCCAAAACCGATAGGAAAACATA
***********************************....(((((((((((.(((((((((.(((.(((.....((((.(((((((...)))))))..))))))).)))))))))).)).)))....))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039731
"Adult females, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039726
"Blastula, untreated"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039757
"Gastrula, oxidized"
...................................................................................................ACTGAATCTCAGAACTACAGTT.................................................. 22 0 1 32.00 32 30 0 0 2 0 0 0 0 0 0
...................................................................................................ACTGAATCTCAGAACTACAGTTG................................................. 23 0 1 12.00 12 10 0 1 0 1 0 0 0 0 0
..................................................................................................AACTGAATCTCAGAACTACAGTT.................................................. 23 0 1 5.00 5 2 0 1 2 0 0 0 0 0 0
................................................................................................ATAACTGAATCTCAGAACTACAGTT.................................................. 25 0 1 5.00 5 1 2 1 0 0 1 0 0 0 0
.................................................................................................TAACTGAATCTCAGAACTACAGTTG................................................. 25 0 1 3.00 3 0 1 1 0 1 0 0 0 0 0
................................................................................................ATAACTGAATCTCAGAACTACAGTTG................................................. 26 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
.................................................................................................TAACTGAATCTCAGAACTACAGTT.................................................. 24 0 1 3.00 3 2 0 0 0 0 0 0 1 0 0
..................................................................................................AACTGAATCTCAGAACTAC...................................................... 19 0 1 2.00 2 0 0 1 0 0 0 0 0 0 1
..................................................................................................AACTGAATCTCAGAACTACAGTTG................................................. 24 0 1 2.00 2 0 0 0 0 1 0 0 0 1 0
................................................................................................ATAACTGAATCTCAGAACTACAGCT.................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................AACGGAAGCTCAGAACTACAGTTG................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................TAACTGAATCTCAGAACTACAGT................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................AACTGAAGCTCAGAACTACAGTT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................AACTGAATCTCATAACTACATTT.................................................. 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................AATGAATCTCAGAACTACAGTT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................ACTGAATCGCAGAACTACAGTT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................ACTGAATCTCAGGACTACAGTTG................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................AATCTCAGAACTACAGTTT................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................TGACTGAATCTCAGAACTGCAGTTG................................................. 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................ACTGAATCTCAGAACTACAGTTGCAGTTTTAT........................................ 32 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................ACTGAATATCAGAACTATAGTT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................AACTGAATCTCAGAACTACAGAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TAGAATAACTGAATCTCAGAACTACAGTT.................................................. 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................CTGAATCTCAGAACTACAGTTG................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................TGAATCTCAGAACTACAGTTG................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................AACGGAATCTCAGAACTACAGTTGA................................................ 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................ACTGAATCTCAGAACTACAGAT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................ACTGAATCTCAGAACTACAGT................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................ACTGAATCTCAGCACTACAGTT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................ACTGAATCTAAGAACTACAGTT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................TAACTGAGTATCAGAACTACAGTT.................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................ACTGGATCTCAGAACTACAGTTG................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTAATGACAGATGGAGACACCGTCAACACATTATGGACCTCCCTTTAATTTACTCAAGACATCTGAGTGATACCAATCGACCACCCGAGGTAGTCTTATTGACTTAGAGTCTTGATGTCAACGTCATAAAAGGATTTTCTTGCGTTTACGGTTTTGGCTATCCTTTTGTAT
***********************************....(((((((((((.(((((((((.(((.(((.....((((.(((((((...)))))))..))))))).)))))))))).)).)))....))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039731
"Adult females, untreated"
.................................................................................................ATTGACTTAGAGTCTTGAT....................................................... 19 0 1 1.00 1 1

Generated: 08/21/2014 at 10:51 AM