ID:

nve-mir-9457-1

 Coordinate:

scaffold_1:1934606-1934673 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.1 -36.7 -36.5
mature
  1. scaffold_1:1934614-1934635 +
  2. scaffold_1:1934643-1934664 -
star
  1. scaffold_1:1934612-1934633 -
  2. scaffold_1:1934645-1934666 +

Sense Strand Reads

AGCAGCTGGCACAAGAAGACTATCCCCTTTGGCTGCTCCCTGATGTCTTTTTCTGGAACTACACATTCTAAGAAAAGTGCTCTTAAAGAGCACTTTTCTTAGAATGTGTtGTTggtGttttTtgggtggggggggggggGggtTGGtGGGGGTtGtTtTGtggggtgg
********************************************............(((.(((((((((((((((((((((((...))))))))))))))))))))))).)))..............***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039754
"Adult males, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039765
"Primary polyps, oxidized"
...........................................................TACACATTCTAAGAAAAGTGCT....................................................................................... 22 0 2 19.00 38 11 8 3 6 6 2 2 0 0
............................................................ACACATTCTAAGAAAAGTGCTCT..................................................................................... 23 0 2 1.00 2 0 0 0 1 0 0 0 1 0
...........................................................TACACATTCTAAGAAAAGTG......................................................................................... 20 0 2 1.00 2 1 0 1 0 0 0 0 0 0
...............................................................CATTCTAAGAAAAGTGCTCT..................................................................................... 20 0 2 0.50 1 0 0 0 0 0 1 0 0 0
...........................................................TACACATTCTAAGAAAAGT.......................................................................................... 19 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...........................................................TACAGATTCTAAGAAAAGTGCT....................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0
...........................................................TACACATTCAAAGAAAAGCGCT....................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................ACACATTCTAAGAAAAGTGCT....................................................................................... 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................................................TACACATTCTAAGGAAAGTGCT....................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................................................TACACATTCTAAGAAAAGTGCTTT..................................................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................................................................CACTTTTCTTAGAATGTGTAGT........................................................ 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...........................................................TAAACATTCGAAGAAAAGTGCT....................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................TACACATTCTAAGAAAAGTGCTC...................................................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...........................................................TACACATTCTAAGAAAAATGCT....................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................................................TACACATTCTAATAAAATTGCT....................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................................................TACACATTCTAAGAAAAGTGC........................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................TACACATTTTAAGAAAAGAGCG....................................................................................... 22 3 4 0.25 1 0 0 0 1 0 0 0 0 0
.................................................................................................CTTAGAATCTGTAGTCCC..................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCGTCGACCGTGTTCTTCTGATAGGGGAAACCGACGAGGGACTACAGAAAAAGACCTTGATGTGTAAGATTCTTTTCACGAGAATTTCTCGTGAAAAGAATCTTACACAtCAAggtCttttAtgggtggggggggggggCggtACCtCCCCCAtCtAtACtggggtgg
*****************************************............(((.(((((((((((((((((((((((...))))))))))))))))))))))).)))..............******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039754
"Adult males, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039731
"Adult females, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039765
"Primary polyps, oxidized"
........................................................................................TCGTGAAAAGAATCTTACACAT.......................................................... 22 0 2 19.00 38 11 8 3 6 6 2 0 2 0 0
.............................................AGAAAAAGACCTTGATGT......................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................GTGAAAAGAATCTTACACAT.......................................................... 20 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
......................................................................................TCTCGTGAAAAGAATCTTACACA........................................................... 23 0 2 1.00 2 0 0 0 1 0 0 0 0 1 0
........................................................................................TCGTTAAAATAATCTTACACAT.......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................TGAAAAGAATCTTACACAT.......................................................... 19 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TCGCGAAAAGAAACTTACACAT.......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TCGTGAAAAGAAGCTTACAAAT.......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.........................................................TGATGTGTAAGATTCTTTTCAC......................................................................................... 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TCGTGAAAAGAATCTTACACA........................................................... 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................CGTGAAAAGAATCTTACACAT.......................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................CTCGTGAAAAGAATCTTACACAT.......................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TCGTAAAAAGAATCTTACACAT.......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TCGTGAAAAGAATCTTAGACAT.......................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
......................................................................................TTTCGTGAAAAGAATCTTACACAT.......................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
......................................................................................TCTCGTGAAAAGAATCTTAC.............................................................. 20 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
........................................................................................TCGTGAAAGGAATCTTACACAT.......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
........................................................................................GCGAGAAAAGAATTTTACACAT.......................................................... 22 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
......................................................CCCTGATGTCTAAGATTC................................................................................................ 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 1
....................................ATCGACTACAGAAAAAGTCCT............................................................................................................... 21 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................GCGTCGGGGGGAGGGGCGGTA........................ 21 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Generated: 08/21/2014 at 09:13 AM