ID:

nve-mir-9456-2

 Coordinate:

scaffold_699:5413-5480 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature
  1. scaffold_699:5449-5470 -
  2. scaffold_533:24465-24486 +
  3. scaffold_441:5522-5543 -
  4. scaffold_364:5534-5555 -
  5. scaffold_266:18966-18987 -
  6. scaffold_161:290958-290979 -
  7. scaffold_152:210078-210099 -
  8. scaffold_157:88459-88480 +
  9. scaffold_148:42292-42313 +
  10. scaffold_109:366446-366467 +
  11. scaffold_82:549286-549307 +
  12. scaffold_80:849822-849843 +
  13. scaffold_80:850665-850686 -
  14. scaffold_70:425039-425060 +
  15. scaffold_67:426645-426666 -
  16. scaffold_46:75319-75340 +
  17. scaffold_46:261814-261835 +
  18. scaffold_36:544606-544627 +
  19. scaffold_30:283846-283867 -
  20. scaffold_6:788433-788454 +
  21. scaffold_533:25299-25320 -
  22. scaffold_367:175686-175707 -
  23. scaffold_54:767987-768008 -
  24. scaffold_37:997848-997869 -
  25. scaffold_3153:1226-1247 -
  26. scaffold_70:425873-425894 -
star
  1. scaffold_3153:1229-1249 +
  2. scaffold_699:5420-5440 -
  3. scaffold_699:5452-5472 +
  4. scaffold_533:25302-25322 +
  5. scaffold_441:5525-5545 +
  6. scaffold_367:175689-175709 +
  7. scaffold_364:5537-5557 +
  8. scaffold_266:18969-18989 +
  9. scaffold_152:210081-210101 +
  10. scaffold_148:42290-42310 -
  11. scaffold_119:403257-403277 -
  12. scaffold_82:549284-549304 -
  13. scaffold_80:849820-849840 -
  14. scaffold_80:850668-850688 +
  15. scaffold_70:425876-425896 +
  16. scaffold_67:426648-426668 +
  17. scaffold_54:767990-768010 +
  18. scaffold_46:75317-75337 -
  19. scaffold_37:997851-997871 +
  20. scaffold_30:283849-283869 +

Sense Strand Reads

AAGCTATTATAGTCCTTCCAAGTCCTTCTAGGTTGTTATGGAAAAGTAGCCTACGTATAGCCGCTGACTCGCGAAATCCTCTCGTAGCGAGGATTTCGCGAGTCAGCGGCTACACGTAGGCTAATGAAAGCTTCGATCCTAAACATGTGCCACTGAACGAATCAGATA
*********************************************.((((((((((.((((((((((((((((((((((((.......)))))))))))))))))))))))).))))))))))...****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039756
"Gastrula, untreated"		 SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039754
"Adult males, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039765
"Primary polyps, oxidized"
............................................................CCGCTGACTCGCGAAATCCTCT...................................................................................... 22 0 20 1.30 26 6 6 2 5 3 2 1 0 1
............................................................CCGCTGACTCGCGAAATCCTCA...................................................................................... 22 1 20 0.10 2 1 1 0 0 0 0 0 0 0
............................................................CCGCTGACTCGCGAAATCCT........................................................................................ 20 0 20 0.10 2 0 0 0 0 0 2 0 0 0
..........................................................................................GGATTTCGCGAGTCAGCGGCT......................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................CCGCTGACTCGAGAAATCCGCT...................................................................................... 22 2 20 0.05 1 0 0 0 1 0 0 0 0 0
............................................................CCGCTGACTCGCGAAATCTTCT...................................................................................... 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................................................AGGATTTCGCGAGTCAGCGGCT......................................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0
...............................................................CTGACTCGCGAAATCCTCTCT.................................................................................... 21 1 20 0.05 1 0 0 1 0 0 0 0 0 0
............................................................CCGCTGACTCGCGAAATCCTA....................................................................................... 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.........................................................TAGCCGCTGACTCGCGAAATC.......................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0
............................................................CCGCTGACTCGCGACATCCT........................................................................................ 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0
............................................................CCGCTGACTCGCGAAATCC......................................................................................... 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.........................................................................................AGGCTTTCGCGCGTCAGCGGCT......................................................... 22 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................................................AGGATTTCGCGAGTCAGCGGT.......................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0
............................TAGGTTGTTATGGAG............................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0
............................................................CCGCCGACTCGCGAAATCCT........................................................................................ 20 1 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TTCGATAATATCAGGAAGGTTCAGGAAGATCCAACAATACCTTTTCATCGGATGCATATCGGCGACTGAGCGCTTTAGGAGAGCATCGCTCCTAAAGCGCTCAGTCGCCGATGTGCATCCGATTACTTTCGAAGCTAGGATTTGTACACGGTGACTTGCTTAGTCTAT
******************************************.((((((((((.((((((((((((((((((((((((.......)))))))))))))))))))))))).))))))))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039764
"Primary polyps, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039754
"Adult males, untreated"		 SRR039758
"Early planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039760
"Late planula, untreated"		 SRR039731
"Adult females, untreated"		 SRR039765
"Primary polyps, oxidized"
.........................................................................................TCCTAAAGCGCTCAGTCGCC........................................................... 20 0 20 1.20 24 10 0 4 6 2 2 0 0
.................................................GGATGCATATCGGCGACTGAGC................................................................................................. 22 0 2 0.50 1 0 1 0 0 0 0 0 0
....................................................TGCATATCGGCGACTGAGC................................................................................................. 19 0 3 0.33 1 1 0 0 0 0 0 0 0
...................................................TTTCATATCGGCGACTGAGC................................................................................................. 20 2 12 0.17 2 1 0 0 0 1 0 0 0
................................................................................................GCGCTCAGTCGCCGATGTGCAT.................................................. 22 0 20 0.15 3 2 0 0 0 0 0 0 1
........................................................TTTCGGCGACTGAGCGCTCTAGGA........................................................................................ 24 2 8 0.13 1 0 0 0 0 1 0 0 0
......................................................TATTTCGGCGACTGAGCGCTCTAGG......................................................................................... 25 3 10 0.10 1 0 0 0 1 0 0 0 0
..........................................................................................CCTAAAGCGCTCAGTCGCC........................................................... 19 0 20 0.10 2 0 0 1 0 1 0 0 0
........................................................................................CTCCTAAAGCGCTCAGTCGC............................................................ 20 0 20 0.10 2 1 0 0 0 0 1 0 0
...........................................................................................................................TACTTTCGGAGCTAGGACTT......................... 20 2 17 0.06 1 0 0 1 0 0 0 0 0
..........................................................TCGGCGACTGAGCGCTTTAGG......................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................................................TCCTAAAGCGCTCATTCGCC........................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................CTCATAAAGCGCTCAGTCGCC........................................................... 21 1 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................................TCCTAAAGCGCTCAGGCGCC........................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................TCCTACAGCGCTCAGTCGCC........................................................... 20 1 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................CGGCGACTGAGCGCTGTAGGA........................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................CTAAAGCGCTCAGTCGCC........................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0
................................................................................................GCGCTCAGTCGCCGATGTGCA................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0
........................................................................................ATCCTAAAGCGCTCAGTCGCC........................................................... 21 1 20 0.05 1 0 0 1 0 0 0 0 0
........................................................................................CTCCTAAAGCGCTCAGTCGCC........................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0
.....................................................................................TCTCTCCTAAAGCGCTCAGTC.............................................................. 21 1 20 0.05 1 0 0 0 0 0 1 0 0
.......................................................................................ACTCCTAAAGCGCTCAGTCGCC........................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................TCGGCGACTGCGCGCTTTCGGA........................................................................................ 22 2 20 0.05 1 0 0 0 0 0 1 0 0
........................................................................................CTCCTAAAGCGCTCGGTCGCC........................................................... 21 1 20 0.05 1 0 0 1 0 0 0 0 0
........................................................................................CTCCTAAATCTCTCAGTCGCC........................................................... 21 2 20 0.05 1 0 1 0 0 0 0 0 0
................................................................ACTGAGCGCTTTAGGAGA...................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 1 0
................................................................................................GAGCTCAGTCGCCGGTGTGCAT.................................................. 22 2 20 0.05 1 0 0 0 0 0 1 0 0
........................................................................................TTCCTAAAGCGCTCAGTCGCC........................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................TCGGCGACTGAGCGCTTTAGGA........................................................................................ 22 0 20 0.05 1 0 0 0 0 0 1 0 0
...............................................................................................AGCGCTCAGTCGCCGATGTGCAT.................................................. 23 0 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................................TCCTAATGCGCTTAGTCGCC........................................................... 20 2 20 0.05 1 0 0 0 1 0 0 0 0

Generated: 08/21/2014 at 10:46 AM