ID:

nve-mir-9456-1

 Coordinate:

scaffold_148:42285-42352 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-69.0
mature
  1. scaffold_699:5449-5470 -
  2. scaffold_533:24465-24486 +
  3. scaffold_441:5522-5543 -
  4. scaffold_364:5534-5555 -
  5. scaffold_266:18966-18987 -
  6. scaffold_161:290958-290979 -
  7. scaffold_152:210078-210099 -
  8. scaffold_157:88459-88480 +
  9. scaffold_148:42292-42313 +
  10. scaffold_109:366446-366467 +
  11. scaffold_82:549286-549307 +
  12. scaffold_80:849822-849843 +
  13. scaffold_80:850665-850686 -
  14. scaffold_70:425039-425060 +
  15. scaffold_67:426645-426666 -
  16. scaffold_46:75319-75340 +
  17. scaffold_46:261814-261835 +
  18. scaffold_36:544606-544627 +
  19. scaffold_30:283846-283867 -
  20. scaffold_6:788433-788454 +
  21. scaffold_533:25299-25320 -
  22. scaffold_367:175686-175707 -
  23. scaffold_54:767987-768008 -
  24. scaffold_37:997848-997869 -
  25. scaffold_3153:1226-1247 -
  26. scaffold_70:425873-425894 -
star
  1. scaffold_157:88489-88508 +
  2. scaffold_148:42325-42344 +
  3. scaffold_67:426619-426638 -
  4. scaffold_30:283005-283024 -
  5. scaffold_16:1414426-1414445 -

Sense Strand Reads

GCTTGTTGTTGTTTAAAGTGTCCCTGTAAGCCAAAAGGCGACCTAGCTTACGTGAAGCCGCTGACTCGCGAAATCCTCTCGTAGCTACGAGAGGATCTCGCGAGTCAGCGGCTACACGTAGGCTAAAGGCGAcctagcaaagtatcaagtgtgagaaagcatctattt
******************************************.(((((((((((.((((((((((((((((.((((((((((....)))))))))).)))))))))))))))).)))))))))))******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039754
"Adult males, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039755
"Adult males, oxidized"
.........................................................CCGCTGACTCGCGAAATCCTCT......................................................................................... 22 0 20 1.20 24 5 6 2 0 6 2 0 1 1 1
...........................................................................................AGGATCTCGCGAGTCAGCGGCTT...................................................... 23 1 7 1.14 8 0 1 0 1 2 1 2 0 1 0
.........................................................CCGCTGACTCGCGAAATCCT........................................................................................... 20 0 20 1.10 22 10 6 2 4 0 0 0 0 0 0
..........................................................................................GAGGATCTCGCGAGTCAGCG.......................................................... 20 0 5 0.40 2 0 0 0 2 0 0 0 0 0 0
...........................................................................................AGGATCTCGCGAGTCAGCGGT........................................................ 21 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................AGGATCTCGCGAGTCAGCGGC........................................................ 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................GAGGATCTCGCGAGTCAGCGGC........................................................ 22 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................GAGGATCTCGCGAGTCAG............................................................ 18 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................AGGATCTCGCGAGTCAGCGGAT....................................................... 22 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................AGAGGATCTCGCGAGTCA............................................................. 18 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................AGGATCTCGCGAGTCAGT........................................................... 18 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................GGGATCTCGCGAGTCAGCGG......................................................... 20 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................AGGATCTCGCGAGTCAGCGGCTTT..................................................... 24 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0
............................................................................................GGATCTCGCGAGTCAGCGGCTTTAT................................................... 25 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0
..........................................................CGCTGACTCGCGAAATCCTC.......................................................................................... 20 0 20 0.10 2 1 0 1 0 0 0 0 0 0 0
.........................................................CCGCTGACTCGCGAAATCCTCA......................................................................................... 22 1 20 0.10 2 0 1 0 0 1 0 0 0 0 0
.........................................................CCGCTGACTCGCGACATCCT........................................................................................... 20 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..........................................................CGCTGACTCGCGAAATCCTCT......................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.........................................................CCGCTGACTCGCGAAATCCTC.......................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................AGGATGTCGCGAGTCAGCGGC........................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................CCGCTGACTCGCGAAATACTC.......................................................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.........................................................CCGCTGACTCGCGAAATCC............................................................................................ 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.........................................................CCGCTTACTCGCGAAATCCT........................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................CCGCTGACTCGCGAAATC............................................................................................. 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................................................CCGCTGGCTCGCGAAATCCTC.......................................................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.........................................................CCGCTGACTCTCTAAATCCTC.......................................................................................... 21 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.........................................................CCGCCGACTCGCGAAATCCT........................................................................................... 20 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.........................................................CCTCTGACTCGCGAAATCCGCT......................................................................................... 22 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.........................................................CCGCTGACTCGCGAAATCTTCT......................................................................................... 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.........................................................CCGCGGACTCGCGAAATCCT........................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................CCGCTGATTCGCGTAATCCT........................................................................................... 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................................................CCGCTGACTCGCGAAATCCTT.......................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGAACAACAACAAATTTCACAGGGACATTCGGTTTTCCGCTGGATCGAATGCACTTCGGCGACTGAGCGCTTTAGGAGAGCATCGATGCTCTCCTAGAGCGCTCAGTCGCCGATGTGCATCCGATTTCCGCTGGtTgGTTTgtTtGTTgtgtgTgTTTgGTtGtTttt
*******************************************.(((((((((((.((((((((((((((((.((((((((((....)))))))))).)))))))))))))))).)))))))))))****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039764
"Primary polyps, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039758
"Early planula, untreated"		 SRR039754
"Adult males, untreated"		 SRR039761
"Late planula, oxidized"
......................................................TTCGGCGACTGAGCGCTCTAGGA........................................................................................... 23 1 7 1.14 8 0 2 2 1 1 1 1
...........................................................................GAGAGCATCGATGCTCTCCTAGAGCGCT................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................TTTCGGCGACTGAGCGCTCTAGGA........................................................................................... 24 2 8 0.13 1 0 0 0 1 0 0 0
...................................................TATTTCGGCGACTGAGCGCTCTAGG............................................................................................ 25 3 10 0.10 1 0 0 0 0 1 0 0
........................................................TGGCGACTGAGCGCTTTAGGA........................................................................................... 21 1 20 0.05 1 0 0 1 0 0 0 0
............................................................GACTGAGCGCTTTAGGAGAG........................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0
.......................................................TCGGCGACTGAGCGCTTTAGG............................................................................................ 21 0 20 0.05 1 0 1 0 0 0 0 0
............................................................GACTGAGCGCTTTCGGAGAG........................................................................................ 20 1 20 0.05 1 1 0 0 0 0 0 0

Generated: 08/21/2014 at 09:33 AM