ID:

nve-mir-9455

 Coordinate:

scaffold_18:243878-243945 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.0 -42.8 -42.6

Sense Strand Reads

TAATACGTAAATTCTACCCCTCAGCATGTACCTGTCCAAGATAATGCTCTAACTTAGACCCTGTTCACACGGAACCGGATGAATATTCGTCCAGACCTGTGTGAATAGGGTCTTAAGAGGGAGGACTGCTCAAAGAAATAAAATTTAGAATCATTTTTAAAGGTACTG
***********************************...........((((..((((((((((((((((((((....((((((....))))))....)))))))))))))))).))))..))))..........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039755
"Adult males, oxidized"		 SRR039754
"Adult males, untreated"		 SRR039731
"Adult females, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039760
"Late planula, untreated"
........................................................................................GTCCAGACCTGTGTGAATAGGG.......................................................... 22 0 1 18.00 18 12 6 0 0 0 0
.........................................TGATGTTCTAACTCAGACCC........................................................................................................... 20 3 12 1.58 19 0 0 19 0 0 0
...........................................ATGTTCTAACTCAGACCC........................................................................................................... 18 2 6 1.50 9 0 0 9 0 0 0
........................................................................................GTCCAGACATGAGTGAATAGGG.......................................................... 22 2 1 1.00 1 1 0 0 0 0 0
........................................................................................GTCCGGACCTGTGTGAATAGGG.......................................................... 22 1 1 1.00 1 0 0 0 1 0 0
........................................................................................GGCCAGACCTGTGTGAATAGGG.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0
........................................................................................TTCCAGACCTGCGTGAATAGGG.......................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.............................................................TGTTCACACGGAACCGGATGATT.................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TCCGGACCTGTGGGAATAGGGT......................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................TCCAGACCTGTGTGAATAGGG.......................................................... 21 0 1 1.00 1 0 1 0 0 0 0
........................................................................................GTCCAGACCTGTGTGAATAGG........................................................... 21 0 1 1.00 1 0 1 0 0 0 0
........................................................................................GTCCAGACCTGTGTGACTATGG.......................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.........................................TGATGTTCTAACGTAGACCC........................................................................................................... 20 3 5 0.40 2 0 0 1 0 1 0
...........................................ATGCTCTAACGTAGGCCC........................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0
.........................................TGATGGTCTAACTCAGACCC........................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0
..........................................GATGTTCTAACGTAGACCC........................................................................................................... 19 3 16 0.13 2 0 0 0 0 0 2
...........................................ATGTTCTAACTCAGACC............................................................................................................ 17 2 20 0.10 2 0 0 2 0 0 0
............................................TGCTCTAACTCAGACCCGT......................................................................................................... 19 3 11 0.09 1 0 0 1 0 0 0
........................................TTGATGTTCTAACTTAGACC............................................................................................................ 20 3 12 0.08 1 0 0 1 0 0 0
........................................TTAATGTTCTAACTCAGACC............................................................................................................ 20 3 12 0.08 1 0 0 1 0 0 0
.................................................................................................TGTGTGAATAAGGTCTTCGG................................................... 20 3 16 0.06 1 0 0 0 0 0 1

Anti-sense strand reads

ATTATGCATTTAAGATGGGGAGTCGTACATGGACAGGTTCTATTACGAGATTGAATCTGGGACAAGTGTGCCTTGGCCTACTTATAAGCAGGTCTGGACACACTTATCCCAGAATTCTCCCTCCTGACGAGTTTCTTTATTTTAAATCTTAGTAAAAATTTCCATGAC
***********************************...........((((..((((((((((((((((((((....((((((....))))))....)))))))))))))))).))))..))))..........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039755
"Adult males, oxidized"
.......ATGTAAGATGGGGAGT................................................................................................................................................. 16 1 9 0.11 1 1

Generated: 08/21/2014 at 09:28 AM