ID:

nve-mir-9451

 Coordinate:

scaffold_319:242214-242281 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature
  1. scaffold_7241:916-938 +
  2. scaffold_2596:10498-10520 +
  3. scaffold_511:16719-16741 +
  4. scaffold_464:112259-112281 +
  5. scaffold_448:126704-126726 +
  6. scaffold_319:196611-196633 +
  7. scaffold_256:126501-126523 +
  8. scaffold_225:58951-58973 +
  9. scaffold_225:387415-387437 +
  10. scaffold_151:506524-506546 +
  11. scaffold_106:653907-653929 +
  12. scaffold_97:493027-493049 +
  13. scaffold_71:523406-523428 +
  14. scaffold_32:1176898-1176920 +
  15. scaffold_27:1038758-1038780 +
  16. scaffold_14:289515-289537 +
  17. scaffold_14:707700-707722 +
  18. scaffold_9:183229-183251 +
  19. scaffold_1:542318-542340 +
  20. scaffold_1:1752093-1752115 +
  21. scaffold_362:117173-117195 +
  22. scaffold_319:242223-242245 +
  23. scaffold_318:238999-239021 +
  24. scaffold_115:468110-468132 +
  25. scaffold_51:382618-382640 +
  26. scaffold_38:660191-660213 +
  27. scaffold_30:131070-131092 +
  28. scaffold_11913:902-924 +
  29. scaffold_586:63594-63616 +
  30. scaffold_75:296202-296224 +
  31. scaffold_54:1105606-1105628 +
  32. scaffold_43:232934-232956 +
  33. scaffold_35:1026672-1026694 +
  34. scaffold_29:76937-76959 +
  35. scaffold_8:1663524-1663546 +
  36. scaffold_14620:1094-1116 -
  37. scaffold_8087:885-907 -
  38. scaffold_1651:8035-8057 -
  39. scaffold_1283:28709-28731 -
  40. scaffold_607:1009-1031 -
  41. scaffold_318:184370-184392 -
  42. scaffold_311:86570-86592 -
  43. scaffold_256:22778-22800 -
  44. scaffold_221:256933-256955 -
  45. scaffold_94:574489-574511 -
  46. scaffold_92:602397-602419 -
  47. scaffold_68:552682-552704 -
  48. scaffold_60:548215-548237 -
  49. scaffold_56:1082822-1082844 -
  50. scaffold_55:326597-326619 -
  51. scaffold_37:938118-938140 -
  52. scaffold_19:1352776-1352798 -
  53. scaffold_4:256186-256208 -
  54. scaffold_1:1569612-1569634 -
  55. scaffold_1:2091564-2091586 -
  56. scaffold_1709:936-958 -
  57. scaffold_1854:6110-6132 -
  58. scaffold_533:42329-42351 -
  59. scaffold_387:186803-186825 -
  60. scaffold_343:173117-173139 -
  61. scaffold_256:203208-203230 -
  62. scaffold_256:204661-204683 -
  63. scaffold_96:520769-520791 -
  64. scaffold_70:453718-453740 -
  65. scaffold_50:361706-361728 -
  66. scaffold_34:209513-209535 -
  67. scaffold_34:456456-456478 -
  68. scaffold_22:738321-738343 -
  69. scaffold_22:794276-794298 -
  70. scaffold_1:1399397-1399419 -
  71. scaffold_1:2396278-2396300 -
  72. scaffold_4278:6201-6223 -
  73. scaffold_275:258597-258619 -
  74. scaffold_262:302335-302357 -
  75. scaffold_215:264908-264930 -
  76. scaffold_91:784600-784622 -
  77. scaffold_22:1075160-1075182 -
star
  1. scaffold_12865:672-688 +
  2. scaffold_362:117212-117228 +
  3. scaffold_319:196650-196666 +
  4. scaffold_319:242252-242268 +
  5. scaffold_318:239038-239054 +
  6. scaffold_225:58990-59006 +
  7. scaffold_222:273610-273626 +
  8. scaffold_222:276039-276055 +
  9. scaffold_185:82935-82951 +
  10. scaffold_151:506563-506579 +
  11. scaffold_128:451642-451658 +
  12. scaffold_101:484823-484839 +
  13. scaffold_76:161261-161277 +
  14. scaffold_71:523445-523461 +
  15. scaffold_55:31559-31575 +
  16. scaffold_35:1026711-1026727 +
  17. scaffold_30:131109-131125 +
  18. scaffold_14:289554-289570 +
  19. scaffold_14:707739-707755 +
  20. scaffold_9:183268-183284 +

Sense Strand Reads

aagattagtgagataaaaaattgaccaagctgtcaggtttttttggacaaattcttgccacgagtctcaaattgacaggaatcaccatattttctggagatcagggagcgggaaaactttagctcttataaatatgggcatcaatgaccatataaggcaatccttggg
********************************************.......(((((((......((((..(((..((((((.........))))))..)))..)))))))))))......************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR039762
"Metamorphosing individuals, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039726
"Blastula, untreated"		 SRR039731
"Adult females, untreated"		 SRR039754
"Adult males, untreated"		 SRR039765
"Primary polyps, oxidized"
...........................................................ACGAGTCTCAAATTGACAGGAAT...................................................................................... 23 0 20 2.30 46 15 7 0 12 5 6 0 1 0 0 0 0 0
.AGATTAGTGAGATAAAAAATTGA................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.AGATTAGGGAGATAAAAAATTGAACAAAC.......................................................................................................................................... 29 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTTAGCTCTTATAAATATGTTCA............................ 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACGAGTCTCAAATTGACCAGAATCACC.................................................................................. 27 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACGAGTCTCAAATTGACAGGAATC..................................................................................... 24 0 20 0.25 5 1 0 0 2 0 1 1 0 0 0 0 0 0
...........................................................ACGAGTCTCAAATTGACAGGAA....................................................................................... 22 0 20 0.15 3 0 1 0 2 0 0 0 0 0 0 0 0 0
.AGATTAGTGAGATAAAAA..................................................................................................................................................... 18 0 20 0.15 3 0 0 0 0 2 0 1 0 0 0 0 0 0
.AGATTAGTGAGATAAAA...................................................................................................................................................... 17 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................GAGTCTCAAATTGACAGGAATCA.................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................TTGGACAAATTCTTGCCACGGGTCTCAAA................................................................................................. 29 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................ACGAGTCTCAACTTGACAGGAA....................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AATATGGGCATCAATGACCATATAAGGC.......... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................ACGAGTCTCAAATTTACAGGAAT...................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................TGGGCATCAATGACCATATAAGGCA......... 25 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................ATTTTCTGGAGATCAGG............................................................... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................TGGGCATCAATGACCATATAAGGC.......... 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................CAAGCTGTCAGGTTTTTTTGGACAAATTC.................................................................................................................. 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................ACGAGTCTCAAATTGACCGGAA....................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................ACGAGTCTCAAATTGACA........................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................TGGAGATCAGGGAGCGGGAAAACTTTA............................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................TATTTTCTGGAGATCAGGGAGCGGGAAA..................................................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACGAGTCTCAAATTGCCAGGAAT...................................................................................... 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................AGGAGTCTCAAATTGACAGGAAT...................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.AGATTAGTGAGATAAAAACTTGACCAAGC.......................................................................................................................................... 29 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACGACTCTCAAATTGACAGGAAT...................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................ATGAGTCTCAAATTGACAGGAAT...................................................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................CAAGCTGTCAGGTTTTTTTGGACAAATT................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................ACGAGTCTCAAATTGACATGAAT...................................................................................... 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTgTttTgtgTgTtTTTTTTttgTGGTTgGtgtGTggtttttttggTGTTTttGttgGGTGgTgtGtGTTTttgTGTggTTtGTGGTtTttttGtggTgTtGTgggTgGgggTTTTGtttTgGtGttTtTTTtTtgggGTtGTTtgTGGTtTtTTggGTTtGGttggg
************************************************.......(((((((......((((..(((..((((((.........))))))..)))..)))))))))))......******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039758
"Early planula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039757
"Gastrula, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039760
"Late planula, untreated"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039754
"Adult males, untreated"		 SRR039759
"Early planula, oxidized"
....................................................................................................................GAAATCGAGAATATTTATACCCGTAGT......................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TGCTCAGAGTTTAACTGTCCTTCGTGGT................................................................................. 28 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................TGCTCAGAGTTTAACTGTCATTGGTGGT................................................................................. 28 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................CTGTTTAAGAACGGTGCTCAGAGTTT................................................................................................. 26 0 20 0.35 7 0 0 0 4 0 0 2 0 0 0 1 0 0
..............................................................................................................................ATATTTATACCCGTAGTAACTGGTATAT.............. 28 1 6 0.33 2 0 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................TGTCCCTCGCCCTTTTTATATCGAGAAT........................................ 28 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................TGTTTAAGAACGGTGCTCAGAGTTT................................................................................................. 25 0 20 0.25 5 0 0 0 5 0 0 0 0 0 0 0 0 0
............................................................GCTCAGAGCTTAACTGTCCTTGGTGGT................................................................................. 27 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AATATTTATACCCGTAGTAACTGGTATAT.............. 29 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATATTTATACCCGTAGTAACTGGTATATT............. 29 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AATATTTATACCCTTAGTAACTGGTATAT.............. 29 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................TAATATTTATACCCTTAGTAACTGGTATAT.............. 30 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................GGTGCTCAGAGTTTAACTGTCCTTAGT.................................................................................... 27 0 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................TCTCGTCCCTCGCCCTTTTGAAATCGAGAA......................................... 30 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................TGTTTAAGAACGGTGCTCAGAGT................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................AGTCCCTCGCCCTTTTGAAATCGAGA.......................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................TGTTTAAGCAGGGTGCTCAGCGTT.................................................................................................. 24 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................AGAACGGTGCTCAGAGTTTAACTGTCCT........................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TACCCGTAGTTACTGGTAT................ 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................CCGTTTAAGAACGGTGCTTAGAGTTT................................................................................................. 26 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AGTACGTTGCTCAGAGTTTAACTGTCCT........................................................................................ 28 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................GAACGGTGCTCAGAGTTTAACTGTCCTT....................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................AGAACGGTCCTCAGAGTTTAACTGTCCT........................................................................................ 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................GTTCAAGAACGGTGCTCAGAGTTT................................................................................................. 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................TAGTCCCTCGTCCTTTTGAAATCGAGAA......................................... 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................GGACGGTGCTCAGAGTTTAACTGTCCT........................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................TTTAAGAACGGTGCTCAGAGTTTA................................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Generated: 08/21/2014 at 10:12 AM