ID:

nve-mir-9450

 Coordinate:

scaffold_469:123536-123603 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.6 -20.3 -18.2
mature
  1. scaffold_2643:39-60 -
  2. scaffold_2703:2676-2697 +
  3. scaffold_622:27592-27613 -
  4. scaffold_609:31298-31319 +
  5. scaffold_649:22406-22427 -
  6. scaffold_549:64236-64257 -
  7. scaffold_469:134600-134621 +
  8. scaffold_338:206656-206677 -
  9. scaffold_277:179744-179765 -
  10. scaffold_258:138109-138130 -
  11. scaffold_227:4145-4166 -
  12. scaffold_112:517172-517193 +
  13. scaffold_104:282324-282345 -
  14. scaffold_83:527979-528000 -
  15. scaffold_82:135444-135465 -
  16. scaffold_70:410401-410422 -
  17. scaffold_68:343510-343531 -
  18. scaffold_46:1068277-1068298 +
  19. scaffold_13:1583480-1583501 -
  20. scaffold_4:2518897-2518918 -
  21. scaffold_469:123541-123562 +
  22. scaffold_419:24262-24283 +
  23. scaffold_279:120344-120365 +
  24. scaffold_232:153895-153916 +
  25. scaffold_146:102141-102162 +
  26. scaffold_127:276253-276274 +
  27. scaffold_127:298341-298362 +
  28. scaffold_74:805760-805781 +
  29. scaffold_17:1018028-1018049 +
star

Sense Strand Reads

ATTGATTGCTACATTATTTTAAACCAAGGCAAACACAGCCATGGAGGAGGCACAGAGATTCTTTAGAAATCAGTGGGCTTCAGTGAATTCTGCAGTGTACTTAAATGAAGAAGCTAAAGTTTGGTAGTAAGCAGGAGATAATGAATTCTGTATAGTTAACTATATGTT
***********************************..(((........)))....((.(((((((......((((.(((.(((......))).))).))))....))))))).))...(((((....))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039756
"Gastrula, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039757
"Gastrula, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039755
"Adult males, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039731
"Adult females, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"
.......................................................AGATTCTTTAGAAATCAGTGGG........................................................................................... 22 0 20 2.40 48 7 10 7 9 6 2 0 0 2 1 2 2 0 0 0
.......................................................AGATTCTTTAGAAATCAGTGGGCT......................................................................................... 24 0 20 0.65 13 4 0 4 1 2 0 0 0 0 0 1 0 1 0 0
....................................................................................GAATACTGCAGTGTACTTAAATGAAGAAG....................................................... 29 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGATTCTTTAGAAATCAGTGGGC.......................................................................................... 23 0 20 0.40 8 1 2 0 1 0 2 1 1 0 0 0 0 0 0 0
.......................................................AGATTCTTTAGAAATCAGTGG............................................................................................ 21 0 20 0.25 5 0 0 1 0 0 1 1 0 0 1 0 0 0 1 0
......................................................GAGATTCTTTAGAAATCAGTGGG........................................................................................... 23 0 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................CTTAAACCAAGGCAAACATAGCCATAGA........................................................................................................................... 28 3 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
ATTGATTGCTACATTATTTTAAACCAAGGC.......................................................................................................................................... 30 0 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................TTAGAAATCAGTGGGCTTCAGTGA.................................................................................. 24 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................AGATTCTTTAGAAATCA................................................................................................ 17 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATTCTTTAGAAATCAGTGGGC.......................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GATTCTTTAGAAATCAGTGGGCT......................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGATTCTTTAGATATCAGTGGGCT......................................................................................... 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................GATTCTTTAGAAATCAGTGGG........................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGATTCTTTAGAAATCAGTGCG........................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................AGAGATTCTTTAGAAATCAGTGG............................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGATTCTTTATAAATCAGTGTG........................................................................................... 22 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............TTATTTTAAACCAAGGTAAACA..................................................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................AGATTCTTTAGAAATCAGTGGGT.......................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGATTCTTTAGAACTCAGTGGG........................................................................................... 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CGATTCTTTAGAATTCAGTGGG........................................................................................... 22 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGATTATTTAGAAATCAGTGGG........................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................AGATTCTTTAGAAATCAGTGGGA.......................................................................................... 23 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........TACATTATTTTAAACCAA............................................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................AGATTCTTTAGAAATCATTGGGCT......................................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................AGATTCTTTATAAATCAGTGG............................................................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................AGAGATTCTTTAGAAATCA................................................................................................ 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GAGATTCTTTAGAAATCA................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATTCTTTAGAAATCAGTGGG........................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TAACTAACGATGTAATAAAATTTGGTTCCGTTTGTGTCGGTACCTCCTCCGTGTCTCTAAGAAATCTTTAGTCACCCGAAGTCACTTAAGACGTCACATGAATTTACTTCTTCGATTTCAAACCATCATTCGTCCTCTATTACTTAAGACATATCAATTGATATACAA
***********************************..(((........)))....((.(((((((......((((.(((.(((......))).))).))))....))))))).))...(((((....))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039755
"Adult males, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039754
"Adult males, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039760
"Late planula, untreated"
......................................................................................................................................CTCTATTATTTAAGACATATCAATTGAT...... 28 1 1 3.00 3 1 0 0 0 1 0 0 0 0 0 1 0 0
......................................................................................................................................CTCTATTATTTAAGACATATCAATTTAT...... 28 2 1 3.00 3 1 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................CCTCTATTATTTAAGACATATCAATTGAT...... 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................CTCTATTATTTAAGACATCTCAATTGAT...... 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TCGTCCTCTATTACTTAAGACATATCAATT......... 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................CCTCTATTATTTAAGACATATCAATTGATCT.... 31 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TCGTCCTCTATTATTTAAGACATATCAAT.......... 29 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................TATTACTTAAGACATATCAAGTGAT...... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TCTATTATTTAAGACATATCAATTTAT...... 27 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................AGTGACCCGATGTCACTTAAGACGC.......................................................................... 25 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CCTCTATTATTTAATACATATCAATTTAT...... 29 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................CTCTATTATTTAATACATATCAATAGAT...... 28 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................TCCTCTATTATTTAATACATATCAATTGAT...... 30 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................ATTATTTAATACATATCAATTGAT...... 24 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................GGACCTTCTCGGTGTCTCTAAGAAAT....................................................................................................... 26 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................CCGACGTCACTTAAGATGTCACATGAAT................................................................. 28 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TTCCTCTATTATTTAAGACATATCAATT......... 28 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................AGAAATCTTTAGTCACCCGA......................................................................................... 20 0 20 0.25 5 0 0 2 3 0 0 0 0 0 0 0 0 0
.............................................................AAATCTTTAGTCACCCGA......................................................................................... 18 0 20 0.20 4 0 0 0 0 0 0 2 0 2 0 0 0 0
.................................................................CTTTAGTCACCCGAGGTCACTTAAGACGT.......................................................................... 29 1 17 0.12 2 0 0 0 0 2 0 0 0 0 0 0 0 0
................................................................TCTTTAGTCACCCGAAGTCACTTACCACGT.......................................................................... 30 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................ACCGCCTCCTCGTCTCTAAG........................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................TTTAGTCTCCCGAACTCACTTAGGACGT.......................................................................... 28 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................GAAATCTTTAGTCAC............................................................................................. 15 0 20 0.10 2 0 0 0 1 0 1 0 0 0 0 0 0 0
................................................................TCTTTGGTCACCCGAAGTCACCTAGGACGT.......................................................................... 30 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................AAGAAATCTTTAGTCACCCAAAGTCACTT................................................................................. 29 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................TCTTTAGTCACCCGAGGTCACTTAAGACGT.......................................................................... 30 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................ATTATTTAATACATTTCAATTGAT...... 24 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................CTTTAGTCACCCGAGGTCACTTAAGACCT.......................................................................... 29 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................CTTTAGTCACCCGAGGTCACTGAAGACGT.......................................................................... 29 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................CGTTAGTCACCCGAGGTCACTTAAGAAGT.......................................................................... 29 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................AAATCTTTAGTCACCAGA......................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................CCGAGGTCACTTAAGACGTAAAATGAAT................................................................. 28 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................CGAGGTCACTTAAGACGTCACACGAAT................................................................. 27 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................CCCGAGGTCACTTAAGACGTCACACGAAT................................................................. 29 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................AGAAATCTTTAGTCACCCG.......................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................AGAAATCTTTAGTCA.............................................................................................. 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0

Generated: 08/21/2014 at 10:25 AM