ID:

nve-mir-9449-1

 Coordinate:

scaffold_108:69562-69629 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.6 -40.6 -40.5
mature
  1. scaffold_108:69571-69592 +
  2. scaffold_82:62176-62197 -
star

Sense Strand Reads

CTCTCGTTTTTTACTTGTTGGGAGGGACGTGGACGATTGAGGACGACGGGCAAGCGTTCTATCTCCTTAAACATTCATCGTCTTGTACACGATGGTTGTTTAAGGAGCTGAAACGCTATCTTGTGATCTCGGGGATGACTCGGTCTTCTCCAAGAAGAGGTCTAAGGA
***********************************.((((((...(((((..((((((.((.(((((((((((.(((((((.......))))))).))))))))))).)).))))))..)))))..)))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039729
"Blastula, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039756
"Gastrula, untreated"
...........................................................TATCTCCTTAAACATTCATCGT....................................................................................... 22 0 2 17.00 34 17 9 3 1 0 1 1 1 1 0
...........................................................TATCTCCTTAAACATTCATCG........................................................................................ 21 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
...........................................................TATATCCTTAAACATGCATCGT....................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................TATCTCCTTAAACATTCATCGTCT..................................................................................... 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................TATCGCCTTAAAAATTCATCGT....................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TCGTCTTGTACACGATGGAA....................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...........................................................TATCTTCTTAAACATTCATCGT....................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................TATCTCCTTAAACATCCATCGT....................................................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...........................................................TATCTCCTTAAACATTCATCT........................................................................................ 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.................................................................CTCAAACATCCATCGTCTT.................................................................................... 19 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0
..........................................ACGACGGGCACGGGGTCTA........................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................CACTAACTTGTGAACTCGG.................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...............................GACGATTGAGGAAGA.......................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.......................................................................................................TGAGCTGAAACGCTATCC............................................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GAGAGCAAAAAATGAACAACCCTCCCTGCACCTGCTAACTCCTGCTGCCCGTTCGCAAGATAGAGGAATTTGTAAGTAGCAGAACATGTGCTACCAACAAATTCCTCGACTTTGCGATAGAACACTAGAGCCCCTACTGAGCCAGAAGAGGTTCTTCTCCAGATTCCT
***********************************.((((((...(((((..((((((.((.(((((((((((.(((((((.......))))))).))))))))))).)).))))))..)))))..)))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 08/21/2014 at 09:07 AM