ID:

nve-mir-9448

 Coordinate:

scaffold_543:26438-26505 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.7 -43.6 -43.5
mature
star
  1. scaffold_7244:376-396 -
  2. scaffold_2874:1228-1248 -
  3. scaffold_919:17740-17760 -
  4. scaffold_543:26476-26496 +
  5. scaffold_380:56806-56826 -
  6. scaffold_404:121837-121857 -
  7. scaffold_404:121892-121912 +
  8. scaffold_256:157167-157187 -
  9. scaffold_256:157222-157242 +
  10. scaffold_194:85750-85770 -
  11. scaffold_178:101642-101662 -
  12. scaffold_119:285421-285441 +
  13. scaffold_116:168549-168569 -
  14. scaffold_118:292616-292636 +
  15. scaffold_107:34552-34572 -
  16. scaffold_33:163904-163924 +
  17. scaffold_23:1098990-1099010 -
  18. scaffold_12:670212-670232 -
  19. scaffold_12:1450985-1451005 -
  20. scaffold_4:1395855-1395875 -
  21. scaffold_115:375083-375103 +
  22. scaffold_2393:7065-7085 +
  23. scaffold_2165:6463-6483 +
  24. scaffold_576:81167-81187 +
  25. scaffold_211:75765-75785 +
  26. scaffold_65:556929-556949 +

Sense Strand Reads

ATGTCTAGACCACAGAGTGCATGCATAATTCCGTCTGATCACAAGGAACTATTGTCTCCTCCGCAGCCGTCCCTAGTGTCAGTCTCAAACACTAAGGACGGCTGCGCAGGAGACTAAAGGAACTACTGCCTCTTTGCACGTTTTTTTTTTATATTGGAACGATAGTAT
********************************************....((...(((((((.(((((((((((.((((((.........)))))).))))))))))).)))))))...)).....******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039731
"Adult females, untreated"		 SRR039758
"Early planula, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039760
"Late planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039755
"Adult males, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039759
"Early planula, oxidized"
...........................................................TCCGCAGCCGTCCCTAGTGT......................................................................................... 20 0 1 39.00 39 14 5 8 7 2 2 0 0 1 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGTCA....................................................................................... 22 0 1 26.00 26 7 3 2 2 4 1 3 1 0 2 0 1 0 0
...........................................................TCCGCAGCCGTCCCTAGT........................................................................................... 18 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGA......................................................................................... 20 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGTCT....................................................................................... 22 1 1 3.00 3 1 0 0 1 1 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGAT........................................................................................ 21 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGTC........................................................................................ 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................ACCGCAGCCGTCCCTAGTGT......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGTCAA...................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGTAT....................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGTA........................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGTT........................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGGCCCTCGGGT......................................................................................... 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAACCGTCCCTAGTGTCAA...................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGTCC....................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTATA........................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCTGCAGCCGTCCCTAGTGTCA....................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................CGCGTCCGCAGACGTCCCTAG............................................................................................ 21 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTAGTGG......................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCACCCGTCCCTAGTGT......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCGAGAGT......................................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTTCCTAGTGTCA....................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGACGACCCTAGTGT......................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCTTCCCTAGTTT......................................................................................... 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................TTCGCAGCCGTCCCTAGTGTCA....................................................................................... 22 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................ACACTAAGGACGGCTGCGCAG........................................................... 21 0 20 0.30 6 3 0 0 3 0 0 0 0 0 0 0 0 0 0
.............................................................CGCAGCCGTCCCTCGTGTCC....................................................................................... 20 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................ACACTAAGGACGGCTGCGCAGG.......................................................... 22 0 20 0.25 5 2 0 1 0 2 0 0 0 0 0 0 0 0 0
...........................................................TCCGCAGCCGTCCCTGGTGAT........................................................................................ 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TTTGCAGCCGTCCCTAGTGTCA....................................................................................... 22 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................ACACTAAGGACGGCTGCGCAT........................................................... 21 1 20 0.15 3 0 1 0 1 1 0 0 0 0 0 0 0 0 0
........................................................................................ACACTAAGGACGGCTGCGCAGGA......................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................ACACTAAGGACGGCTGCGCAGGTTT....................................................... 25 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................ACACTAAGGACGGCTGCGCA............................................................ 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CACTAAGGACGGCTGCGCAGGAGACT..................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................ACACTAAGGACGGCTGCGCAGGT......................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACACTAAGGATGGCTGCGCAG........................................................... 21 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TACAGATCTGGTGTCTCACGTACGTATTAAGGCAGACTAGTGTTCCTTGATAACAGAGGAGGCGTCGGCAGGGATCACAGTCAGAGTTTGTGATTCCTGCCGACGCGTCCTCTGATTTCCTTGATGACGGAGAAACGTGCAAAAAAAAAATATAACCTTGCTATCATA
********************************************....((...(((((((.(((((((((((.((((((.........)))))).))))))))))).)))))))...)).....******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039759
"Early planula, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039755
"Adult males, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039754
"Adult males, untreated"
......................................................................................TTTGTGATTCCTGCCGACGCGT............................................................ 22 0 1 3.00 3 1 1 1 0 0 0 0
...............................................................GTCGGCAGGGATCACAGCCAAAG.................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
........................................................ATTAGGCGTCGGCAGGGATCACA......................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................TTGTGATTTCTGCCGACGCGT............................................................ 21 1 2 0.50 1 0 0 0 1 0 0 0
......................................................AGAGGACGCGTCGGCAGGGATCACAGTC...................................................................................... 28 1 19 0.11 2 0 0 0 0 1 0 1
............................AAGGCAGACTTGTGT............................................................................................................................. 15 1 14 0.07 1 1 0 0 0 0 0 0
...............................................................GTCGGCAGGGATCACAGTCAGAGCT................................................................................ 25 1 15 0.07 1 0 0 0 0 0 1 0
..............................................................................................TCCTGCCGACGCGTCCTCTG...................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0
......................................................AGAGGCCGCGTCGGCAGGGATCACAGTC...................................................................................... 28 2 20 0.05 1 0 0 0 0 1 0 0

Generated: 08/21/2014 at 10:32 AM