ID:

nve-mir-9446

 Coordinate:

scaffold_3:1717798-1717865 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

1.0
mature
star
  1. scaffold_14732:1108-1127 +
  2. scaffold_7357:3912-3931 -
  3. scaffold_49:842110-842129 +
  4. scaffold_32:1165431-1165450 +
  5. scaffold_3:1717836-1717855 -

Sense Strand Reads

tGGtgtgTgTTtTTTggTtTGTTttttgTGTGttTGGTTgttttTttTGtgGtgtGtGtgtTttgGtgtTtGGtGtttTttgtTGGTTTTTTTTTTgTTtTGTgGTgtTGTgttTGTTGTTtGATAAGGACATAAGGGAACCAGCCTTTACTGTGCTATAATTTCATG
*********************************************.................................................................................****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039726
"Blastula, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"
..........................................................................................TTTTTTCTTATGTCGTCATGT......................................................... 21 0 1 29.00 29 14 12 1 1 0 1 0 0 0 0
.........................................................................................TTTTTTTCTTATGTCGTCATGT......................................................... 22 0 1 4.00 4 3 0 0 0 0 0 1 0 0 0
..........................................................................................TTTTTTCTTATGTCGTCATGTC........................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................TTTTTTCTTATGTCGTCATG.......................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................TTTTTTCTTATTTCGTCATGT......................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................TTTTTTTCTTATGTCGTCTTGT......................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................TTTTTTCTTATGTCGTCATTT......................................................... 21 1 5 0.80 4 1 1 0 0 0 0 0 0 1 1
...........................................................................................TTTTTCTTATGTCGTCATGT......................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................TTTTTTCTTATGTAGTCGTGT......................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................TTTTTTCTCATGTCGTCATGT......................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................TTTTTTCTTATGTCGTCATGTT........................................................ 22 1 5 0.40 2 1 0 0 1 0 0 0 0 0 0
..........................................................................................TTTTTTCTTATGTCGTCATGTA........................................................ 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
............................................................ATAACGACATAGGAGAAATA........................................................................................ 20 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
............................................................ATAACGACATAGGAGAAATAA....................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
............................................................ATGACGACATAGGAGAAATAA....................................................................................... 21 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................TTTTTTCTTATGTCGTCATT.......................................................... 20 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................TCTTTTCTTATGTCGTCATGT......................................................... 21 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

tCCtgtgAgAAtAAAggAtACAAttttgACACttACCAAgttttAttACtgCtgtCtCtgtAttgCtgtAtCCtCtttAttgtACCAAAAAAAAAAgAAtACAgCAgtACAgttACAACAAtCTATTCCTGTATTCCCTTGGTCGGAAATGACACGATATTAAAGTAC
******************************************.................................................................................********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039762
"Metamorphosing individuals, untreated"
...........................................................................TTTATTGTAGCAAAAA............................................................................. 16 1 20 0.05 1 1

Generated: 08/21/2014 at 10:05 AM