ID:

nve-mir-9442

Coordinate:

scaffold_7785:3476-3543 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-47.0	-46.7	-46.6

mature

star

Sense Strand Reads

GTCTACCACCCGATGAGACGACGTCATTCGTCTGCTGATAGAATAGGCGGGGTGCCCCGGAATATCAGGAGGACGCATTCGTTTTACGCATGCGTCCTCGTGATACTTCCGGTCATTCCCAAATGCCACCTCGCATTTACCTGATCACAAACATGCTGTGCAGCGGTT *********************************..........(((((((((..(((((((((((.((((((((((.(((...))).)))))))))).))))).)))))).)))))).....)))......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR039755 "Adult males, oxidized"	SRR039754 "Adult males, untreated"	SRR039726 "Blastula, untreated"
............................................................AATATCAGGAGGACGCATTCG.......................................................................................	21	0	2	22.00	44	20	23	1
........................................................................................CATACGTCCTCGTGATACTTC...........................................................	21	1	2	2.50	5	2	3	0
............................................................AATATCAGGAGGACGCATT.........................................................................................	19	0	2	1.50	3	3	0	0
............................................................AATATAAGGAGGACGCATTCG.......................................................................................	21	1	2	1.00	2	2	0	0
............................................................AATATCAGGAGGACGCATTCT.......................................................................................	21	1	2	1.00	2	1	1	0
.............................................................ATATCAGGAGGACGCATTCG.......................................................................................	20	0	2	1.00	2	1	1	0
............................................................AATATCAGGAGGGCGCATT.........................................................................................	19	1	2	0.50	1	1	0	0
............................................................AATATCAGGAGGACGCCTTCG.......................................................................................	21	1	2	0.50	1	0	1	0
............................................................AATATCACGAGGACGCGTTCG.......................................................................................	21	2	2	0.50	1	1	0	0
............................................................AATATCAGGAGGGCGCATTCG.......................................................................................	21	1	2	0.50	1	1	0	0
............................................................AATATCAGGAGGATGCATTCG.......................................................................................	21	1	2	0.50	1	0	1	0
............................................................AATATCAGGAGGACGCATTTTTT.....................................................................................	23	2	2	0.50	1	1	0	0
........................................................................................CATACGTCCTCGTGATACTTTT..........................................................	22	3	3	0.33	1	1	0	0
.....................TGTCATTCGTCTACTGATGGA..............................................................................................................................	21	3	4	0.25	1	0	1	0

Anti-sense strand reads

CAGATGGTGGGCTACTCTGCTGCAGTAAGCAGACGACTATCTTATCCGCCCCACGGGGCCTTATAGTCCTCCTGCGTAAGCAAAATGCGTACGCAGGAGCACTATGAAGGCCAGTAAGGGTTTACGGTGGAGCGTAAATGGACTAGTGTTTGTACGACACGTCGCCAA *********************************..........(((((((((..(((((((((((.((((((((((.(((...))).)))))))))).))))).)))))).)))))).....)))......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total

Generated: 08/21/2014 at 10:46 AM