ID:

nve-mir-9441-1

 Coordinate:

scaffold_198:119600-119667 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.4 -37.0 -36.9
mature
  1. scaffold_2056:10603-10625 +
  2. scaffold_272:228148-228170 -
  3. scaffold_257:298369-298391 +
  4. scaffold_249:13763-13785 -
  5. scaffold_198:119641-119663 -
  6. scaffold_170:364833-364855 +
  7. scaffold_24:578584-578606 -
star

Sense Strand Reads

GGCTCGGCGTCTCCCCTGGGCCTCGATCGCCCGCTGGACGATGAGGCACTAGAGGGCAAGATTACTCGGGGTGAGTACATCGATCTTGCCCTCCTTCACCCCGATAATCTTGCGCACGCCGGGCCTTAATTCCAGCTCGGTTTCGCCGAGAACTCGGAGAGCGTCAGG
***********************************(((...((((((........(((((((((.((((((((((...................))))))))))))))))))).........))))))..)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039765
"Primary polyps, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039726
"Blastula, untreated"
......................................................GGCAAGATTACTCGGGGTGAGTA........................................................................................... 23 0 7 10.43 73 25 18 10 9 4 3 1 3 0 0 0 0 0
...................................................GAGGGCAAGATTACTCGGGGTGA.............................................................................................. 23 0 9 1.33 12 5 2 0 2 1 0 0 1 1 0 0 0 0
......................................................GGCAAGATTACTCGGGGTGAGT............................................................................................ 22 0 7 0.86 6 0 1 1 0 1 0 0 1 0 0 0 1 1
...................................................GAGGGCAAGATTACTCGGGGTGAG............................................................................................. 24 0 9 0.78 7 4 1 0 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................CGAGAACTCGGAGAGCGTCAGG 22 0 4 0.75 3 0 2 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................CGAGAACTCGGAGAGCGTCAG. 21 0 4 0.50 2 0 0 0 0 0 0 0 0 0 0 2 0 0
......................................................GGCAAGATTACTCGGGGTGAGTAC.......................................................................................... 24 0 6 0.50 3 0 0 2 0 0 0 0 0 1 0 0 0 0
.........................................................................AGTACATCGATCTTTCCCTCCTTCTCCC................................................................... 28 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................GGCAAGATTACTCGGGGTGTGTA........................................................................................... 23 1 7 0.43 3 1 1 0 0 0 0 0 0 1 0 0 0 0
......................................................GGCAAGATTACTCGGGGTGAGTACA......................................................................................... 25 0 6 0.33 2 0 0 0 1 0 0 0 0 1 0 0 0 0
...................................................GAGGGCAAGATTACTCGGGGTGAGTACA......................................................................................... 28 0 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGCAAGATTAATCGGGGTGAGTA........................................................................................... 23 1 7 0.29 2 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................AGTACATCGATCTTGCTCTCCCTAA...................................................................... 25 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................TCCAGCTCGGTTTCAC...................... 16 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................GGCAAGATTACTCGGGGTGAGAA........................................................................................... 23 1 9 0.22 2 0 0 1 0 0 1 0 0 0 0 0 0 0
......................................................GGCAAGATTACTCGGGGTGAGTACATCG...................................................................................... 28 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................GAGGGCAAGATTACTCGGGGTGAGTACATC....................................................................................... 30 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................GGCAAGATTACTCGGGGTGAGTACATCGA..................................................................................... 29 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................GGCAAGATTACTCGGGGTGCGTACATC....................................................................................... 27 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................GTTTCGCCGAGAACTCGGAGAGC...... 23 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................AGGCACTAGAGGGCAAGATTACTCGGG.................................................................................................. 27 0 11 0.18 2 0 1 0 0 0 0 0 0 0 1 0 0 0
......................................................GACAAGATTACTCGGGGCGAGTGC.......................................................................................... 24 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GCCGAGAACTCGGAGAGAGTAT.. 22 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................GCAAGATTACTCGGGGGGAGTA........................................................................................... 22 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GCAAGATTACTCGGGGTGAGTA........................................................................................... 22 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGCAAAATTACTCGGGGTGAGTA........................................................................................... 23 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GGCAAGATTACTCGAGGTGAGTA........................................................................................... 23 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................GGCAAGATTACTCGGGGAGAGTA........................................................................................... 23 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................GGCAAGATTACTCGAGGTGAGT............................................................................................ 22 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................GCCAAGATTACTCGGGGTGAGTA........................................................................................... 23 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................GGAAAGAATACTCGGGGAGAGTA........................................................................................... 23 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................GGAAAGATTACTCGGGGTGAGTA........................................................................................... 23 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................GGCAAGATTACTCGGGGTTAGT............................................................................................ 22 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................GGCAAGATTACTCGGGGTGAGGAC.......................................................................................... 24 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................CCCGATAATCTTGCGCACGCCGG.............................................. 23 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................GAGGGCAAGACTACTCGGGGTGA.............................................................................................. 23 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GAGGGAAAGATTGCTCGGGGTGA.............................................................................................. 23 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................GAGGGCTAGATTACTCGGGGTGA.............................................................................................. 23 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GAGGGCAAGATTACTCGGGTTGA.............................................................................................. 23 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................GGCAAGATTACTCGGGG................................................................................................. 17 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................GAGGGCAAGATTACTCGGGGTG............................................................................................... 22 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................GGCACGCCGGGCTTTACTT..................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................GCGGGCAAGATTACTCGGGGTGA.............................................................................................. 23 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................GACAAGATTACTAGGGGAGAGT............................................................................................ 22 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................AGGCACTAGAGGGCAAGATTACT...................................................................................................... 23 0 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................AGGCACTAGAGGGCAAGATTAAT...................................................................................................... 23 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................ACTAGAGGGCAAGATTACT...................................................................................................... 19 0 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................GGCAAGATTAATAGGGGTGAGAA........................................................................................... 23 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................ATGCACTAGAGGGCAAGATTA........................................................................................................ 21 1 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGAGCCGCAGAGGGGACCCGGAGCTAGCGGGCGACCTGCTACTCCGTGATCTCCCGTTCTAATGAGCCCCACTCATGTAGCTAGAACGGGAGGAAGTGGGGCTATTAGAACGCGTGCGGCCCGGAATTAAGGTCGAGCCAAAGCGGCTCTTGAGCCTCTCGCAGTCC
***********************************(((...((((((........(((((((((.((((((((((...................))))))))))))))))))).........))))))..)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039764
"Primary polyps, untreated"		 SRR039757
"Gastrula, oxidized"		 SRR039754
"Adult males, untreated"		 SRR039760
"Late planula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039731
"Adult females, untreated"
....................................................TCCCGTTCTAATGAGCCCCACTCATGT......................................................................................... 27 0 6 1.17 7 0 0 0 1 2 2 0 2 0 0 0 0 0 0
.......GCAGAGGCGGCCCGGAGCCA............................................................................................................................................. 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CGCGTCCGGCCCGGAAGTAAGGTT................................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TCTAATGAGCCCCACTCATGTAGCTAGAAC................................................................................ 30 0 4 0.75 3 1 0 0 0 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................AAGGTCGAGCCAAAGCGGCTCTTGAAT............ 27 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATGAACCCCACTCATGTAGCTAGAACGG.............................................................................. 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AAAGCGGCTCTTGAGCCTCT........ 20 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................TTCTAATGAGCTCCACTCATGT......................................................................................... 22 1 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................TCTAATGACCCCCATTCATGTAGCTAGAAC................................................................................ 30 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................GTTCTAATGAGCCCCACTCATGT......................................................................................... 23 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................ATCTCCTGTTCTAATGAGCCCCACTCATG.......................................................................................... 29 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................TCTAATGATCCCCACTCATGTAGCTAGAAC................................................................................ 30 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TCTAATGACCCCCATTCATGTAGCTAGAGC................................................................................ 30 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TTAAGTTTGAGCCAAAGCGGCTCTTGCGC............ 29 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TCCCGTTCTAATCAGCCCCACTCATGT......................................................................................... 27 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................ACTCATGTAGCTAGAAC................................................................................ 17 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................ATGAGCCCCACTCATGTAGCTAGAACGT.............................................................................. 28 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................AATGACCCCCACTCATTTAG....................................................................................... 20 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................TAATGACCCCCACTCCTGTAGCGAGAAC................................................................................ 28 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................ACCGTTCTAATGAGCCCCAC............................................................................................... 20 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CCGTGATCTACCGTTCTAA......................................................................................................... 19 1 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................CCGTGATCTCCCGTTCTAAT........................................................................................................ 20 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................CCGTTCTAATGACCCCCACT.............................................................................................. 20 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................CGTGATTTCCCTTTCTAATGA...................................................................................................... 21 2 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................CAAGCTAGAGGGCGACCTG................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Generated: 08/21/2014 at 09:39 AM