ID:

nve-mir-9440-3

 Coordinate:

scaffold_700:37789-37856 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature
  1. scaffold_1437:24043-24065 +
  2. scaffold_700:37798-37820 -
  3. scaffold_146:20617-20639 +
  4. scaffold_162:344842-344864 -
star
  1. scaffold_7509:3116-3135 -
  2. scaffold_1954:10421-10440 -
  3. scaffold_1994:10090-10109 -
  4. scaffold_931:18955-18974 -
  5. scaffold_832:22007-22026 -
  6. scaffold_401:87404-87423 -
  7. scaffold_321:158713-158732 -
  8. scaffold_344:189488-189507 -
  9. scaffold_265:246332-246351 -
  10. scaffold_274:62441-62460 -
  11. scaffold_224:244548-244567 -
  12. scaffold_175:242027-242046 -
  13. scaffold_162:37671-37690 -
  14. scaffold_160:249245-249264 -
  15. scaffold_113:294557-294576 -
  16. scaffold_108:47304-47323 -
  17. scaffold_97:286817-286836 -
  18. scaffold_95:177871-177890 -
  19. scaffold_42:759709-759728 -
  20. scaffold_36:436921-436940 -
  21. scaffold_3296:9339-9358 -
  22. scaffold_2808:7118-7137 -
  23. scaffold_1047:3097-3116 -
  24. scaffold_700:37835-37854 -
  25. scaffold_661:55510-55529 -
  26. scaffold_503:81988-82007 -
  27. scaffold_441:60230-60249 -
  28. scaffold_441:62291-62310 -
  29. scaffold_388:89598-89617 -
  30. scaffold_272:239373-239392 -
  31. scaffold_249:26768-26787 -
  32. scaffold_165:73414-73433 -
  33. scaffold_151:117218-117237 -
  34. scaffold_136:488956-488975 -
  35. scaffold_125:162859-162878 -
  36. scaffold_93:322933-322952 -
  37. scaffold_21:1042465-1042484 -
  38. scaffold_21:1131279-1131298 -
  39. scaffold_11:1693596-1693615 -
  40. scaffold_9:1580932-1580951 -
  41. scaffold_2594:3893-3912 +
  42. scaffold_1731:12933-12952 +
  43. scaffold_1724:48-67 +
  44. scaffold_1437:24009-24028 +
  45. scaffold_715:42541-42560 +
  46. scaffold_712:22026-22045 +
  47. scaffold_374:159798-159817 +
  48. scaffold_377:80700-80719 +
  49. scaffold_305:122991-123010 +
  50. scaffold_323:224216-224235 +
  51. scaffold_307:124067-124086 +
  52. scaffold_307:130341-130360 +
  53. scaffold_272:297368-297387 +
  54. scaffold_259:313726-313745 +
  55. scaffold_179:190657-190676 +
  56. scaffold_60:1062579-1062598 +
  57. scaffold_37:275950-275969 +
  58. scaffold_18:147191-147210 +
  59. scaffold_23:77696-77715 +
  60. scaffold_10:1796026-1796045 +

Sense Strand Reads

GtGgttGTGttggTggtgttGtggTTgGTGtTTtGgtttGGGtgGGtttGgtTttTgttgGtGtGTGTgttggTGggGgGttGGTgTtTGtGTGGTgTGTTGgTTgTgTTTGTGGtGggtTtgtgGGgtGGGGgTgGgGtgTgTGtGttGTTgGTGTtggggGtgtTg
*************************************.......................................................................................******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039756
"Gastrula, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039755
"Adult males, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039728
"Unfertilized eggs, oxidized"
......................................AGGGACGGAAAGCATAATCAACGAGAGTG..................................................................................................... 29 0 3 0.33 1 0 1 0 0 0 0 0
......................................................................................TATGAGTGGTCTGTTGCTTCTCT........................................................... 23 0 4 0.25 1 1 0 0 0 0 0 0
......................................................................................TATGAGTGGTCTGTTGCTTCTCTTTGTG...................................................... 28 0 4 0.25 1 0 0 1 0 0 0 0
.................................................................................AGGTCTATGAGTCGTCTGTTGCTTTTCT........................................................... 28 2 5 0.20 1 1 0 0 0 0 0 0
....................................................TAATCAACGAGAGTGTCAAC................................................................................................ 20 0 20 0.10 2 0 0 0 2 0 0 0
............................TGATTAGCAAAGGGACGGA......................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0
....................................................TAATCAACGAGAGTGTCAACCTGCCGCGA....................................................................................... 29 0 20 0.05 1 1 0 0 0 0 0 0
....................................................TAATCAACGAGAGTGTCAACCTGCCGC......................................................................................... 27 0 20 0.05 1 0 0 0 0 0 1 0
.......................................................TCAACGAGAGTGTCAACCTGCCGCGAAG..................................................................................... 28 0 20 0.05 1 0 0 0 0 1 0 0
...............................................................................................................................................TGAGAAGTTCGTGTACCCCGACATC 25 0 20 0.05 1 0 1 0 0 0 0 0
....................................................TAATCAACGAGAGTCTCAACCTGCCG.......................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 1
....................................................TAATCAACGAGAGTGTCAACCTGCCGCGAAG..................................................................................... 31 0 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

CtCgttCACttggAggtgttCtggAAgCACtAAtCgtttCCCtgCCtttCgtAttAgttgCtCtCACAgttggACggCgCttCCAgAtACtCACCAgACAACgAAgAgAAACACCtCggtAtgtgCCgtCCCCgAgCgCtgAgACtCttCAAgCACAtggggCtgtAg
********************************************.......................................................................................************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039726
"Blastula, untreated"		 SRR039731
"Adult females, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039758
"Early planula, untreated"
..................................CGTTTCCCTGCCTTTCGTATTAGTTGCT.......................................................................................................... 28 0 3 0.67 2 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................GCGCTGAGACTCTTCAAGCACATGGGGCT.... 29 0 20 0.40 8 0 5 0 0 0 0 3 0 0 0 0 0
...................................GTTTCCCTGCCTTTCGTATTAGTTGCT.......................................................................................................... 27 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................CGCTGAGACTCTTCAAGCACATGGGGCT.... 28 0 20 0.20 4 0 0 0 0 0 4 0 0 0 0 0 0
.......................................................................GGACGGCGCTTCCAGATACTCACCA........................................................................ 25 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................GACGGCGCTTCCAGATACTCACCA........................................................................ 24 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
................................................................CACAGTTGGACGGCGCTTCCAGATACT............................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................ATATGTGCCGTCCCCGAGC............................... 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCGAGCGCTGAGACTCTTCAAGCACATGG........ 29 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................TTGGACGGCGCTTCCAGATACTCACCA........................................................................ 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................GCGCTGAGACTCTTCAGGCACATGGGGCT.... 29 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CGAGCGCTGAGACTCTTCAAGCATATGG........ 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................TGTGCCGTCCCCGAGCGCTGAGACTCT.................... 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................ATGTGCCGTCCCCGAGCGCTGAGACTCT.................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................CTGAGACTCTTCAAGCACATGGGGCT.... 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................ACGGCGCTTCCAGATACTCACCA........................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................GTTGGACGGCGCTTCCAGATACTCACCA........................................................................ 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................CGGCGCTTCCAGATACTCACCA........................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................CGAGCGCTGACACTCTTCAAGCACATGGGG...... 30 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...........GGAGGTGTTCTGGAAGCACTAATCGTTT................................................................................................................................. 28 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................AGCGCTGAGACTCTTCAAGCACATGGGGCT.... 30 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
........CTTGGAGGTGTTCTGGAAGCACTAATCGT................................................................................................................................... 29 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Generated: 08/21/2014 at 10:46 AM