ID:

nve-mir-9440-2

Coordinate:

scaffold_88:15525-15592 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

mature

star

Sense Strand Reads

tGgttGTGttggTggtgttGtggTTgGTGtTTtGgtttGGGtgGGtgtGgtTttTgttgGtGtGTGTgttggTGggGgGttGGTgTtTGtGTGGTgTGTTGgTgtTgTTTGTGTtGggtTtgtgGGgtGGtGgTgGgGtgTgTGtGttGTTgGTGTtggggGtgtTgt *********************************..................................................................................................*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR039764 "Primary polyps, untreated"	SRR039757 "Gastrula, oxidized"	SRR039727 "Unfertilized eggs, untreated"	SRR039729 "Blastula, oxidized"	SRR039756 "Gastrula, untreated"	SRR039731 "Adult females, untreated"	SRR039760 "Late planula, untreated"
................................................................................AGGACTATGAGGGGTCTGTTGATCATCT............................................................	28	3	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................TATGAGAGGTCTGTTGCACATCTTTGT........................................................	27	2	4	0.25	1	0	1	0	0	0	0	0
................................................GCATAATCAACGAGAGTGTCAACCTGC.............................................................................................	27	0	20	0.15	3	0	3	0	0	0	0	0
...........................TGATTAGCAAAGGGACGGA..........................................................................................................................	19	0	20	0.10	2	0	0	0	0	1	1	0
...................................................TAATCAACGAGAGTGTCAACCTG..............................................................................................	23	0	20	0.10	2	0	0	0	2	0	0	0
...............................................AGCATAATCAACGAGAGTGTCAACCTGC.............................................................................................	28	0	20	0.05	1	0	0	0	0	1	0	0
...................................................TAATCAACGAGAGTGTCTACCTG..............................................................................................	23	1	20	0.05	1	0	0	1	0	0	0	0
....................................................AATCAACGAGAGTGTCAACCTGCC............................................................................................	24	0	20	0.05	1	0	0	1	0	0	0	0
....................................................AATCAACGAGAGTGTCAACCTGCCGCG.........................................................................................	27	0	20	0.05	1	0	0	0	0	0	0	1
..........................................................................................GTGGTCTGTTGCTCATCTTTGTGG......................................................	24	1	20	0.05	1	0	1	0	0	0	0	0
...................................................TAATCAACGAGAGTGTCAACCTGCCGCG.........................................................................................	28	0	20	0.05	1	1	0	0	0	0	0	0

Anti-sense strand reads

tCgttCACttggAggtgttCtggAAgCACtAAtCgtttCCCtgCCtgtCgtAttAgttgCtCtCACAgttggACggCgCttCCAgAtACtCACCAgACAACgAgtAgAAACACAtCggtAtgtgCCgtCCtCgAgCgCtgAgACtCttCAAgCACAtggggCtgtAgt *********************************..................................................................................................*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR039728 "Unfertilized eggs, oxidized"	SRR039731 "Adult females, untreated"	SRR039727 "Unfertilized eggs, untreated"	SRR039760 "Late planula, untreated"	SRR039763 "Metamorphosing individuals, oxidized"	SRR039754 "Adult males, untreated"	SRR039757 "Gastrula, oxidized"	SRR039756 "Gastrula, untreated"	SRR039759 "Early planula, oxidized"	SRR039755 "Adult males, oxidized"	SRR039729 "Blastula, oxidized"	SRR039765 "Primary polyps, oxidized"	SRR039758 "Early planula, untreated"	SRR039764 "Primary polyps, untreated"
........................................................................................................................TGTGCCGTCCTCGAGCGCTGAGACTCTT....................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GCGCTGAGACTCTTCAAGCACATGGGGCT.....	29	0	20	0.40	8	0	5	0	0	0	0	3	0	0	0	0	0	0	0
.................................................................CAGTTGGACGGCGCTTCCAGATACTCACCA.........................................................................	30	0	20	0.20	4	0	1	0	0	0	3	0	0	0	0	0	0	0	0
..................................................................AGTTGGACGGCGCTTCCAGATACTCACCA.........................................................................	29	0	20	0.20	4	0	2	0	2	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CGCTGAGACTCTTCAAGCACATGGGGCT.....	28	0	20	0.20	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0
.......................................................................GACGGCGCTTCCAGATACTCACCA.........................................................................	24	0	20	0.15	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0
...................................................................TTTGGACGGCGCTTCCAGATACTCACCA.........................................................................	28	1	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0
.........................................................................CGGCGCTTCCAGATACTCACCA.........................................................................	22	0	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0
..................................GTTTCCCTGCCTGTCGTATTAGTTGCT...........................................................................................................	27	0	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................ACACATCGGGATGTGCATT........................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AGACTCTTCAAGCACATGGGGCTGTAGT	28	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CTGAGACTCTTCAAGCACATGGGGCT.....	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................CGAGCGCTGACACTCTTCAAGCACATGGGG.......	30	1	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................GGACGGCGCTTCCAGATACTCACCA.........................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................CGTTTCCCTGCCTGTCGGATTAGTTGCT...........................................................................................................	28	1	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................CGCTGAGACTCTTCAAGCACATCGGGCT.....	28	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................CTTTTCCCTGCCTGTCGTATTAGTTGCT...........................................................................................................	28	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................ACTAATCGTTTCCCTGCCTGTCGTAT...................................................................................................................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................GCGCTGAGACTCTTCAAGCACACGGGGCT.....	29	1	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ACGGCGCTTCCAGATCCTCACCA.........................................................................	23	1	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................GTTTCCCTGCCTGTCGTA....................................................................................................................	18	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................TGCCTGTCGTATTAGTTGCT...........................................................................................................	20	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AGCGCTGAGACTCTTCAAGCACATGGGGCT.....	30	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................TTTCCCTGCCTGTCGTATTAGTTGCT...........................................................................................................	26	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......CTTGGAGGTGTTCTGGAAGCACTAATCGT....................................................................................................................................	29	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................TTGGACGGCGCTTCCAGATACTCACCA.........................................................................	27	0	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................GGACGGCGCTTCCAGATACTCAC...........................................................................	23	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........GGAGGTGTTCTGGAAGCACTAATCGTTT..................................................................................................................................	28	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................ACAGTTGGACGGCGCTTCCAGATACT..............................................................................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........TCTGAGGTGTTCTGGAAGCACT..........................................................................................................................................	22	2	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0

Generated: 08/21/2014 at 10:52 AM