ID:

nve-mir-9440-1

 Coordinate:

scaffold_39:1060822-1060889 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature
  1. scaffold_4760:7049-7077 +
  2. scaffold_791:44634-44662 +
  3. scaffold_474:38877-38905 +
  4. scaffold_417:98245-98273 +
  5. scaffold_288:66912-66940 +
  6. scaffold_260:171514-171542 +
  7. scaffold_256:329783-329811 +
  8. scaffold_249:197479-197507 +
  9. scaffold_194:50472-50500 +
  10. scaffold_140:187674-187702 +
  11. scaffold_110:151307-151335 +
  12. scaffold_110:189680-189708 +
  13. scaffold_110:222727-222755 +
  14. scaffold_107:481513-481541 +
  15. scaffold_52:944129-944157 +
  16. scaffold_37:432056-432084 +
  17. scaffold_12:244844-244872 +
  18. scaffold_10:824701-824729 +
  19. scaffold_8:1791297-1791325 +
  20. scaffold_6:1463010-1463038 +
  21. scaffold_7170:2570-2598 +
  22. scaffold_7170:4492-4520 +
  23. scaffold_1437:25136-25164 +
  24. scaffold_942:12552-12580 +
  25. scaffold_758:16271-16299 +
  26. scaffold_450:97537-97565 +
  27. scaffold_426:102916-102944 +
  28. scaffold_344:153271-153299 +
  29. scaffold_208:241107-241135 +
  30. scaffold_150:181512-181540 +
  31. scaffold_110:22862-22890 +
  32. scaffold_108:427147-427175 +
  33. scaffold_94:390186-390214 +
  34. scaffold_94:557051-557079 +
  35. scaffold_94:584768-584796 +
  36. scaffold_85:54715-54743 +
  37. scaffold_56:274291-274319 +
  38. scaffold_39:162941-162969 +
  39. scaffold_14:827711-827739 +
  40. scaffold_7:34278-34306 +
  41. scaffold_3950:1786-1814 +
  42. scaffold_1910:1185-1213 +
  43. scaffold_1674:12087-12115 +
  44. scaffold_668:68026-68054 +
  45. scaffold_490:86701-86729 +
  46. scaffold_457:49200-49228 +
  47. scaffold_292:74173-74201 +
  48. scaffold_274:185765-185793 +
  49. scaffold_206:301819-301847 +
  50. scaffold_182:446177-446205 +
  51. scaffold_162:69683-69711 +
  52. scaffold_139:512178-512206 +
  53. scaffold_121:536737-536765 +
  54. scaffold_119:130289-130317 +
  55. scaffold_97:12612-12640 +
  56. scaffold_69:897751-897779 +
  57. scaffold_58:934750-934778 +
  58. scaffold_57:65635-65663 +
  59. scaffold_20:1392933-1392961 +
  60. scaffold_19:1502278-1502306 +
  61. scaffold_2845:5309-5337 +
  62. scaffold_2594:3893-3921 +
  63. scaffold_2317:8556-8584 +
  64. scaffold_1146:1549-1577 +
  65. scaffold_1032:36851-36879 +
  66. scaffold_536:99530-99558 +
  67. scaffold_526:45880-45908 +
  68. scaffold_485:28469-28497 +
  69. scaffold_305:122991-123019 +
  70. scaffold_307:124067-124095 +
  71. scaffold_307:130341-130369 +
  72. scaffold_272:297368-297396 +
  73. scaffold_127:232524-232552 +
  74. scaffold_91:683573-683601 +
  75. scaffold_73:573814-573842 +
  76. scaffold_60:1062579-1062607 +
  77. scaffold_37:275950-275978 +
  78. scaffold_18:147191-147219 +
  79. scaffold_9517:499-527 -
  80. scaffold_3296:9330-9358 -
  81. scaffold_2808:7109-7137 -
  82. scaffold_1533:17090-17118 -
  83. scaffold_1047:3088-3116 -
  84. scaffold_700:37826-37854 -
  85. scaffold_661:55501-55529 -
  86. scaffold_547:26402-26430 -
  87. scaffold_547:29305-29333 -
  88. scaffold_503:81979-82007 -
  89. scaffold_388:89589-89617 -
  90. scaffold_272:239364-239392 -
  91. scaffold_249:26759-26787 -
  92. scaffold_151:117209-117237 -
  93. scaffold_136:488947-488975 -
  94. scaffold_125:162850-162878 -
  95. scaffold_34:809351-809379 -
  96. scaffold_21:1042456-1042484 -
  97. scaffold_21:1131270-1131298 -
  98. scaffold_9:1580923-1580951 -
  99. scaffold_7509:3107-3135 -
  100. scaffold_3599:4000-4028 -
  101. scaffold_2515:11898-11926 -
  102. scaffold_1427:6996-7024 -
  103. scaffold_931:18946-18974 -
  104. scaffold_456:22446-22474 -
  105. scaffold_321:158704-158732 -
  106. scaffold_290:155574-155602 -
  107. scaffold_258:277497-277525 -
  108. scaffold_258:302348-302376 -
  109. scaffold_274:62432-62460 -
  110. scaffold_226:49894-49922 -
  111. scaffold_189:297517-297545 -
  112. scaffold_167:268194-268222 -
  113. scaffold_162:37662-37690 -
  114. scaffold_160:249236-249264 -
  115. scaffold_131:374875-374903 -
  116. scaffold_54:161410-161438 -
  117. scaffold_39:39138-39166 -
  118. scaffold_39:1060857-1060885 -
  119. scaffold_272:210025-210053 +
  120. scaffold_264:298356-298384 +
  121. scaffold_108:150199-150227 +
  122. scaffold_47:1007678-1007706 +
  123. scaffold_8:1735592-1735620 +
  124. scaffold_536:103838-103866 +
  125. scaffold_400:47304-47332 +
  126. scaffold_438:84503-84531 +
  127. scaffold_269:138522-138550 +
  128. scaffold_146:388265-388293 +
  129. scaffold_154:227085-227113 +
  130. scaffold_65:667534-667562 +
  131. scaffold_59:705139-705167 +
  132. scaffold_14:788486-788514 +
  133. scaffold_7:340073-340101 +
  134. scaffold_6:1180505-1180533 +
  135. scaffold_4:122265-122293 +
  136. scaffold_4:124132-124160 +
star

Sense Strand Reads

tgGTGgttGTGttggTTgtgttGtggTTgGTGtTTtGgtttGGGtgGGtgtGgtTttTgttgGtGtGTGTgttggTGggGgGttGGTgTtTGtGTGGTgTGTTGgTggTgTTTtTGGtGggtTtgtgGGgtGGGGgTgGgGtgTgTGtGttGTTgGTGTtggggGtgt
***********************************..................................................................................................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039755
"Adult males, oxidized"		 SRR039754
"Adult males, untreated"		 SRR039758
"Early planula, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039765
"Primary polyps, oxidized"
......................................................TAATCAACGAGAGTGTCAACCTGCCGCGA..................................................................................... 29 0 20 0.10 2 2 0 0 0 0 0
..........................TTCGTGATTAGCAAAGGGACGGACAGCA.................................................................................................................. 28 0 20 0.05 1 0 0 0 0 1 0
..........................TTCGTGATTAGCAAAGGGACGGAC...................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0
...............TTCACAAGACCTTCGTGATAT.................................................................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0
.........TGAACCTTCACAAGACCTTCGTGATTAGCAA................................................................................................................................ 31 0 20 0.05 1 0 0 1 0 0 0
......................................................TAATCAACGAGAGTGTCAACCTGCCGCG...................................................................................... 28 0 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

tgCACgttCACttggAAgtgttCtggAAgCACtAAtCgtttCCCtgCCtgtCgtAttAgttgCtCtCACAgttggACggCgCttCCAgAtACtCACCAgACAACgAggAgAAAtACCtCggtAtgtgCCgtCCCCgAgCgCtgAgACtCttCAAgCACAtggggCtgt
***********************************..................................................................................................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039731
"Adult females, untreated"		 SRR039757
"Gastrula, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039758
"Early planula, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039729
"Blastula, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039764
"Primary polyps, untreated"
.........................................................................................................................................GCGCTGAGACTCTTCAAGCACATGGGGCT.. 29 0 20 0.55 11 5 3 0 0 2 0 0 0 0 0 1 0 0 0 0
.....................................................................AGTTGGACGGCGCTTCCAGATACTCACCA...................................................................... 29 0 20 0.35 7 2 3 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CGCTGAGACTCTTCAAGCACATGGGGCT.. 28 0 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0
....................................................................CAGTTGGACGGCGCTTCCAGATACTCACCA...................................................................... 30 0 20 0.20 4 1 0 0 0 0 0 0 3 0 0 0 0 0 0 0
......................................................................TTTGGACGGCGCTTCCAGATACTCACCA...................................................................... 28 1 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GACGGCGCTTCCAGATACTCACCA...................................................................... 24 0 20 0.15 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0
............................................................................CGGCGCTTCCAGATACTCACCA...................................................................... 22 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.....................................GTTTCCCTGCCTGTCGTATTAGTTGCT........................................................................................................ 27 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CCGAGCGCTGAGACTCTTCAAGCACATGG...... 29 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................AGTGTTCTGGAAGCACTAAT.................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................ATATGTGCCGTCCCCGAGC............................. 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATGTGCCGTCCCCGAGCGCTGAGACTCTT................. 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................GTTTCCCTGCCTGTCGTA................................................................................................................. 18 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................ACTAATCGTTTCCCTGCCTGTCGTAT................................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................GCGCTGAGACTCTTCAAGCACACGGGGCT.. 29 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTGGACGGCGCTTCCAGATACTCACCA...................................................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGTGCCGTCCCCGAGCGCTGAGACTCT.................. 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................CTTTTCCCTGCCTGTCGTATTAGTTGCT........................................................................................................ 28 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................GTTTCCCTGCCTGTCGTATTAGTTTCT........................................................................................................ 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................AGCGCTGAGACTCTTCAAGCACATGGGGCT.. 30 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GGACGGCGCTTCCAGATACTCAC........................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ATGTGCCGTCCCCGAGCGCTGAGACTCT.................. 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................CGAGCGCTGAGACTCTTCAAGCACATCG...... 28 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................GGACGGCGCTTCCAGATACTCACCA...................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................TGCCTGTCGTATTAGTTGCT........................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................ACAGTTGGACGGCGCTTCCAGATACT........................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Generated: 08/21/2014 at 10:18 AM