ID:

nve-mir-9437-3

Coordinate:

scaffold_93:324078-324145 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-24.5	-24.4	-24.1	-19.2

mature

star

Sense Strand Reads

gatgcagcgacaagactcggtctcatgtccctcaggaaggaatacccagaccttaacgagaatctgatacggttccagtcagactggagtggaaagacgctaatacaggttcacgacctcaaaaatagaggttggactaaaccacaaccgctgttcaataaggacggg *********************************.((((..........))))..((.(((((((((.((.(((((.((......)).)))))...))...)).))))))).))(((((.......))))).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR039757 "Gastrula, oxidized"	SRR039760 "Late planula, untreated"	SRR039758 "Early planula, untreated"	SRR039727 "Unfertilized eggs, untreated"	SRR039731 "Adult females, untreated"	SRR039754 "Adult males, untreated"	SRR039755 "Adult males, oxidized"	SRR039756 "Gastrula, untreated"	SRR039759 "Early planula, oxidized"	SRR039761 "Late planula, oxidized"	SRR039764 "Primary polyps, untreated"	SRR039726 "Blastula, untreated"	SRR039728 "Unfertilized eggs, oxidized"	SRR039729 "Blastula, oxidized"
....................................................TTAACGAGAATCTGATACGGTTCCAGT.........................................................................................	27	0	20	1.60	32	9	11	12	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GTTCACGACCTCAAAAA...........................................	17	0	4	0.50	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................CGCTAATACAGGTTCACGACCTCAAAAA...........................................	28	0	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................ACCTTAACGAGAATCTGATACGGTTCC............................................................................................	27	0	20	0.20	4	0	2	0	0	1	0	0	0	0	0	0	1	0	0
....................................................TTAACGAGAATCTGATACGGTTCCAGTC........................................................................................	28	0	20	0.15	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................ACCTTAACGAGAATCTGATACGGTTCCA...........................................................................................	28	0	20	0.15	3	0	0	0	1	0	0	0	2	0	0	0	0	0	0
....................................................TTAACGAGAATCTGATACGGTTC.............................................................................................	23	0	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0
....................................................TTAACGAGAATCTGATACGGTTCC............................................................................................	24	0	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTAACGAGAATCTGATACGGTTCCAGTCA.......................................................................................	29	0	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.........................................................................................TGGAAAGACGATAATA...............................................................	16	1	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................CAGACCTTAACGAGAATCTGATACGGTTCC............................................................................................	30	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................TAACGAGAATCTGATACGGTTC.............................................................................................	22	0	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TTAACGAGAATCTGATACGGTTCCA...........................................................................................	25	0	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................TTAACGAGAATCTGATACGGAACCAGTC........................................................................................	28	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................TAACGAGAATCTGATACGG................................................................................................	19	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................ACCTTAACGAGAATATGATACGGGTCC............................................................................................	27	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................TTAACGAGAATCTGATACGGTA..............................................................................................	22	1	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................ACCTTAACGAGAATCTGATACGGTTC.............................................................................................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................ACCTTAACGAGAATCTGATACGGTT..............................................................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................TTAACGAGAATCTGATACGGTTCCCGT.........................................................................................	27	1	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0

Anti-sense strand reads

gTtgGTgGgTGTTgTGtGggtGtGTtgtGGGtGTggTTggTTtTGGGTgTGGttTTGgTgTTtGtgTtTGggttGGTgtGTgTGtggTgtggTTTgTGgGtTTtTGTggttGTGgTGGtGTTTTTtTgTggttggTGtTTTGGTGTTGGgGtgttGTTtTTggTGggg *********************************.((((..........))))..((.(((((((((.((.(((((.((......)).)))))...))...)).))))))).))(((((.......))))).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR039757 "Gastrula, oxidized"	SRR039754 "Adult males, untreated"	SRR039727 "Unfertilized eggs, untreated"	SRR039726 "Blastula, untreated"	SRR039760 "Late planula, untreated"	SRR039761 "Late planula, oxidized"
......................................CCTTATGGGTCTGGAATTGCTCTT..........................................................................................................	24	0	20	0.10	2	2	0	0	0	0	0
..................................................................................TGACCTCACCTCCCTGCGAC..................................................................	20	3	12	0.08	1	0	1	0	0	0	0
.............................GGTGTCCTTCCTTATGGGTCTGGAGTT................................................................................................................	27	2	16	0.06	1	0	0	1	0	0	0
............................GGGAGTCCTTCCTTATGGGTCTGGAAT.................................................................................................................	27	0	17	0.06	1	0	1	0	0	0	0
...........................................TGGGTCTGGAATTGCTCTT..........................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
.............................................................................CTGTCGGGCCTCACCTTTCTGCGATTAT...............................................................	28	3	20	0.05	1	1	0	0	0	0	0
..........................................ATGGGTCTGGAATTGCTCTTAGACTAT...................................................................................................	27	0	20	0.05	1	1	0	0	0	0	0
........................................TTATGTGTCTGGAATTGCTCTTATACTA....................................................................................................	28	2	20	0.05	1	0	0	0	0	0	1
........................................TTATGGGTCTGGAATTGCTCTT..........................................................................................................	22	0	20	0.05	1	0	0	0	1	0	0
...........................................TGGGTCTGGAATTGCTCTTAGACTAT...................................................................................................	26	0	20	0.05	1	0	0	0	0	1	0

Generated: 08/21/2014 at 10:56 AM