ID:

nve-mir-9437-1

 Coordinate:

scaffold_4575:805-872 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

mature
  1. scaffold_1944:6619-6645 +
  2. scaffold_1516:11242-11268 +
  3. scaffold_1427:8168-8194 +
  4. scaffold_445:118833-118859 +
  5. scaffold_362:172700-172726 +
  6. scaffold_290:156746-156772 +
  7. scaffold_290:216636-216662 +
  8. scaffold_180:274459-274485 +
  9. scaffold_180:278282-278308 +
  10. scaffold_163:20688-20714 +
  11. scaffold_132:104565-104591 +
  12. scaffold_121:238011-238037 +
  13. scaffold_99:262766-262792 +
  14. scaffold_92:532030-532056 +
  15. scaffold_84:519699-519725 +
  16. scaffold_38:1160427-1160453 +
  17. scaffold_15:226043-226069 +
  18. scaffold_8:7261-7287 +
  19. scaffold_4:2402168-2402194 +
  20. scaffold_1:1482199-1482225 +
  21. scaffold_72:276247-276273 +
  22. scaffold_15696:718-744 -
  23. scaffold_3115:4000-4026 -
  24. scaffold_3177:9180-9206 -
  25. scaffold_1502:3033-3059 -
  26. scaffold_1447:7496-7522 -
  27. scaffold_482:38279-38305 -
  28. scaffold_482:73590-73616 -
  29. scaffold_449:98917-98943 -
  30. scaffold_395:155978-156004 -
  31. scaffold_378:125384-125410 -
  32. scaffold_333:40838-40864 -
  33. scaffold_307:129174-129200 -
  34. scaffold_258:182379-182405 -
  35. scaffold_260:170353-170379 -
  36. scaffold_256:328613-328639 -
  37. scaffold_179:189497-189523 -
  38. scaffold_161:305330-305356 -
  39. scaffold_110:46302-46328 -
  40. scaffold_65:666426-666452 -
  41. scaffold_40:775935-775961 -
  42. scaffold_2802:4593-4619 +
  43. scaffold_1076:16923-16949 +
  44. scaffold_764:39730-39756 +
  45. scaffold_677:48647-48673 +
  46. scaffold_441:61377-61403 +
  47. scaffold_374:146851-146877 +
  48. scaffold_293:213911-213937 +
  49. scaffold_225:270938-270964 +
  50. scaffold_176:122290-122316 +
  51. scaffold_158:31211-31237 +
  52. scaffold_162:346055-346081 +
  53. scaffold_125:163967-163993 +
  54. scaffold_108:48487-48513 +
  55. scaffold_95:140864-140890 +
  56. scaffold_82:110034-110060 +
  57. scaffold_72:548279-548305 +
  58. scaffold_34:959827-959853 +
  59. scaffold_25:1159341-1159367 +
  60. scaffold_22:1270403-1270429 +
  61. scaffold_15:1579501-1579527 +
  62. scaffold_340:173848-173874 +
  63. scaffold_241:242079-242105 +
  64. scaffold_210:11362-11388 +
  65. scaffold_197:233669-233695 +
  66. scaffold_153:346482-346508 +
  67. scaffold_136:490132-490158 +
  68. scaffold_1994:11263-11289 +
  69. scaffold_293:215484-215510 +
  70. scaffold_175:243208-243234 +
  71. scaffold_147:302854-302880 +
  72. scaffold_135:155723-155749 +
  73. scaffold_93:324080-324106 +
  74. scaffold_59:33494-33520 +
  75. scaffold_41:920844-920870 +
  76. scaffold_17:1489568-1489594 +
  77. scaffold_832:23166-23192 +
  78. scaffold_846:5180-5206 +
  79. scaffold_700:39390-39416 +
  80. scaffold_365:108761-108787 +
  81. scaffold_292:135636-135662 +
  82. scaffold_241:326399-326425 +
  83. scaffold_207:203682-203708 +
  84. scaffold_150:335830-335856 +
  85. scaffold_136:529180-529206 +
  86. scaffold_125:368341-368367 +
  87. scaffold_111:302164-302190 +
  88. scaffold_88:342915-342941 +
  89. scaffold_59:807301-807327 +
  90. scaffold_46:750419-750445 +
  91. scaffold_39:1062044-1062070 +
  92. scaffold_42:71920-71946 +
  93. scaffold_15:62230-62256 +
  94. scaffold_8:1360343-1360369 +
  95. scaffold_3973:7185-7211 -
  96. scaffold_1503:7724-7750 -
  97. scaffold_1437:22813-22839 -
  98. scaffold_890:12031-12057 -
  99. scaffold_454:68716-68742 -
  100. scaffold_457:48016-48042 -
  101. scaffold_438:83401-83427 -
  102. scaffold_369:24667-24693 -
  103. scaffold_371:187291-187317 -
  104. scaffold_354:31048-31074 -
  105. scaffold_295:70459-70485 -
  106. scaffold_264:203164-203190 -
  107. scaffold_247:7014-7040 -
  108. scaffold_107:480329-480355 -
  109. scaffold_62:97199-97225 -
  110. scaffold_60:1034216-1034242 -
  111. scaffold_53:480548-480574 -
  112. scaffold_23:76514-76540 -
  113. scaffold_19:1501117-1501143 -
  114. scaffold_6:1461850-1461876 -
  115. scaffold_6399:6263-6289 -
  116. scaffold_2386:477-503 -
  117. scaffold_942:11482-11508 -
  118. scaffold_450:96365-96391 -
  119. scaffold_269:137345-137371 -
  120. scaffold_194:49282-49308 -
  121. scaffold_150:180339-180365 -
  122. scaffold_151:118248-118274 +
  123. scaffold_4575:844-870 -
  124. scaffold_722:16544-16570 -
  125. scaffold_305:121809-121835 -
  126. scaffold_318:38337-38363 -
  127. scaffold_137:201772-201798 -
  128. scaffold_53:359500-359526 -
  129. scaffold_39:1022661-1022687 -
  130. scaffold_40:108060-108086 -
  131. scaffold_6:1179370-1179396 -
  132. scaffold_1482:26302-26328 -
  133. scaffold_354:158241-158267 -
  134. scaffold_344:152122-152148 -
  135. scaffold_320:213525-213551 -
  136. scaffold_288:65761-65787 -
  137. scaffold_208:240006-240032 -
  138. scaffold_174:222028-222054 -
  139. scaffold_181:298837-298863 -
  140. scaffold_140:256690-256716 -
  141. scaffold_76:591869-591895 -
  142. scaffold_57:811690-811716 -
  143. scaffold_47:459823-459849 -
  144. scaffold_29:1356614-1356640 -
star
  1. scaffold_4545:609-628 -
  2. scaffold_4575:808-827 -
  3. scaffold_2828:4913-4932 -
  4. scaffold_1731:11714-11733 -
  5. scaffold_1502:2997-3016 -
  6. scaffold_1437:22777-22796 -
  7. scaffold_715:41331-41350 -
  8. scaffold_400:46089-46108 -
  9. scaffold_374:158586-158605 -
  10. scaffold_375:162828-162847 -
  11. scaffold_375:164003-164022 -
  12. scaffold_371:187255-187274 -
  13. scaffold_272:208805-208824 -
  14. scaffold_154:225900-225919 -
  15. scaffold_113:386089-386108 -
  16. scaffold_94:389026-389045 -
  17. scaffold_56:273160-273179 -
  18. scaffold_39:161720-161739 -
  19. scaffold_37:274726-274745 -
  20. scaffold_1:1386994-1387013 -

Sense Strand Reads

GGTGgtGgGtgttGtgTgGGTgTggtGTgggTgtGGGtGtttTtgggtGtggTTttgGtGttTgTGtTtgGGTTggtGTgtGtggtGtGGGGtttGtgGgTttTtgtGGTTgGgttggTTGGgtttGttGGTTGGtgTtttggttttgtGgTGTTgttGGtGGtgGGG
*************************************.............................................................................................************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039726
"Blastula, untreated"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039731
"Adult females, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039754
"Adult males, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039729
"Blastula, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039758
"Early planula, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039765
"Primary polyps, oxidized"
....................................................TTAACGAGAATCTGATACGGTTCCAGT......................................................................................... 27 0 20 1.55 31 15 16 0 0 0 0 0 0 0 0 0 0 0 0 0
................TCGGTCTCCAGTCCCTCAGGGAGAAAT............................................................................................................................. 27 0 20 0.20 4 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0
....................................................TTAACGAGAATCTGATACGGTTCC............................................................................................ 24 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0
................TCGGTCTCCAGTCCCTCAGGGAG................................................................................................................................. 23 0 20 0.15 3 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0
....................................................TTAACGAGAATCTGATACGGTT.............................................................................................. 22 0 20 0.15 3 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0
................TCGGTCTCCAGTCCCTCAGGGAGA................................................................................................................................ 24 0 20 0.10 2 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0
.................................................ACCTTAACGAGAATCTGATACGGTTC............................................................................................. 26 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
................TCGGTCTCCAGTCCCTCAGGGAGAA............................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................CTTAACGAGAATCTGATACGGTTCCAGT......................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................ACCTTAACGAGAATCTGATACGGTT.............................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTAACGAGAATCTGATACGGTTCCAGTC........................................................................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................CAGACCTTAACGAGAATCTGATACGGTTC............................................................................................. 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................CTTAACGAGAATCTGATACGGTTCCAGTC........................................................................................ 29 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............AGACTCGGTCTCCAGTCCCTCT...................................................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................ACCTTAACGAGAATCTGATACGGTTCC............................................................................................ 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................TCGGTCTCCAGTCCCTCAGGGAGAAATACC.......................................................................................................................... 30 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTAACGAGAATCTTATACGGTTCCAGTC........................................................................................ 28 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................TCGGTCTCCAGTCCCTCAGGGAGAAATA............................................................................................................................ 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................ACCTTAACGAGAATCTGATACGGT............................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................TCGGTCTCCAGTCCCTCAGGGAGTAATACC.......................................................................................................................... 30 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TTAACGAGAATCAGATACGGTTCCAGTCA....................................................................................... 29 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................TTAACGAGAATCTGATACGGTTCCAGTCT....................................................................................... 29 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................GACGCTAATACAGGTTCGCA..................................................... 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCACgtCgCtgttCtgAgCCAgAggtCAgggAgtCCCtCtttAtgggtCtggAAttgCtCttAgACtAtgCCAAggtCAgtCtggtCtCCCCtttCtgCgAttAtgtCCAAgCgttggAACCgtttCttCCAACCtgAtttggttttgtCgACAAgttCCtCCtgCCC
**************************************.............................................................................................************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039727
"Unfertilized eggs, untreated"		 SRR039726
"Blastula, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039731
"Adult females, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039754
"Adult males, untreated"		 SRR039764
"Primary polyps, untreated"
..................................CCCTCTTTATGGGTCTGGAATTGCTCTT.......................................................................................................... 28 0 20 0.60 12 3 0 3 0 4 1 0 0 1 0 0 0 0 0
................................................................................................................................TCCAACCTGATTTGGTTTTGTCGACAAGTT.......... 30 0 6 0.33 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................CTTTATGGGTCTGGAATTGCTCTT.......................................................................................................... 24 0 20 0.25 5 4 0 0 0 0 0 0 0 0 0 0 1 0 0
..ACGTCGCTGTTCTGAGCCAGAGGT.............................................................................................................................................. 24 0 20 0.20 4 0 2 0 0 0 2 0 0 0 0 0 0 0 0
............................................................................TCAGTCTGGTCTCCCCTTTCTGCGATTAT............................................................... 29 0 20 0.20 4 0 0 0 0 0 1 0 0 2 0 1 0 0 0
.............................................................................CAGTCTGGTCTCCCCTTTCTGCGATTAT............................................................... 28 0 20 0.20 4 2 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................AGTCTGGTCTCCCCTTTCTGCGATTAT............................................................... 27 0 20 0.15 3 0 0 2 0 0 0 0 0 0 0 0 0 0 1
...CGTCGCTGTTCTGAGCCAGAGGT.............................................................................................................................................. 23 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
..........................................ATGGGTCTGGAATTGCTCTTAGACTAT................................................................................................... 27 0 20 0.15 3 0 0 0 0 2 0 0 0 0 1 0 0 0 0
....GTCGCTGTTCTGAGCCAGAGGT.............................................................................................................................................. 22 0 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................TGGTCTCCCCTTTCTGCGATTAT............................................................... 23 0 20 0.10 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0
...................................CCTCTTTATGGGTCTGGAATTGCTCTT.......................................................................................................... 27 0 20 0.10 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0
...........................................TGGGTCTGGAATTGCTCTTAGACTAT................................................................................................... 26 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
....................................CTCTTTATGGGTCTGGAATTGCTCTT.......................................................................................................... 26 0 20 0.10 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0
.......................................TTTATGGGTCTGGAATTGCTCTT.......................................................................................................... 23 0 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CGACCTGATTTGGTTTTGTCGACAAGTT.......... 28 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CTTTATGGGTCTGGAATTGCTCTTAGA....................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................TCCCTCTTTATGGTTCTGGAATTGCTCTT.......................................................................................................... 29 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CTGGTCTCCCCTTTCTGCGATTAT............................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TGGGTCTGGAATGGCTCTT.......................................................................................................... 19 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TTGCTCTTAGACTATGCCAAGGTCAGTCT..................................................................................... 29 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................AGTCTGGTCTCCCCTTGCTGCGATTAT............................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.CACGTCGCTGTTCTGAGCCAGAGG............................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................ATGGGTCTGGAATTGCTCTTAGACT..................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................TCTGGTCTCCCCTTTCTGCGATTAT............................................................... 25 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................CTGGAATTGCTCTTAGACTATGCCAAGGTC.......................................................................................... 30 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................TCCCTCTTTATGGGTCTGGAATTGCTCTT.......................................................................................................... 29 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................CTTTATGGGTCTGGAATTGCTCTTAGACT..................................................................................................... 29 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Generated: 08/21/2014 at 10:27 AM