ID:

nve-mir-9436-1

 Coordinate:

scaffold_47:218242-218309 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.6 -37.1 -37.0
mature
  1. scaffold_733:28323-28345 +
  2. scaffold_47:218249-218271 -
  3. scaffold_14:74193-74215 +
star

Sense Strand Reads

GTCAAGGTTTAAAGAGCCCTACTCAGCCAAACATTTGTTATTGTTAAGGCCTGGCTAAACATTCAAACATGTTTGTCAAACATTTCGTTTGACGCAAATGTTTGTATGTTTAGCCACCCACAAAACATGGCACTCAATTGGCTTCCACAACACGTACAGATGTTTGAA
***********************************((((((.(((..((..(((((((((((.(((((((...((((((((.....))))))))...))))))).))))))))))).))....))))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039731
"Adult females, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"		 SRR039726
"Blastula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039761
"Late planula, oxidized"
........................................................................................TTGACGCAAATGTTTGTATGTTT......................................................... 23 0 3 9.67 29 13 4 4 0 1 2 0 1 1 1 0 1 1
........................................................................................TTGACGCAAATGTTTGTATGTT.......................................................... 22 0 3 9.67 29 11 9 3 4 1 0 0 0 0 0 1 0 0
........................................................................................TTGACGCAAATGTTTGTATGT........................................................... 21 0 3 5.67 17 7 5 2 1 1 0 1 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTTA......................................................... 23 1 4 2.75 11 7 3 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGACGCAAATGTTTGTATGTTT......................................................... 22 0 3 2.00 6 0 1 1 2 1 1 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTA.......................................................... 22 1 4 1.75 7 2 2 1 0 0 0 2 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTTTA........................................................ 24 0 3 1.33 4 1 2 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTAT............................................................. 19 0 3 1.33 4 1 3 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTTTAT....................................................... 25 1 3 1.00 3 1 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TGACGCAAATGTTTGTATGTT.......................................................... 21 0 3 0.67 2 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTAT......................................................... 23 1 4 0.50 2 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTTAT........................................................ 24 2 4 0.50 2 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTGT......................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGACGCAAATGTTTGTATGTTTA........................................................ 23 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................TTGACGCAAATGGTTGTATGTTT......................................................... 23 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TGACGCAAATGTTTGTATGTTTCA....................................................... 24 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGGACGCAAATGTTTGTATGTTT......................................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TTTGACGCAAATGTTTGTATGT........................................................... 22 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTTTTT....................................................... 25 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTTTT........................................................ 24 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATTTTTGTATGTTT......................................................... 23 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................TGACGCAAATGTTTGTATGTTA......................................................... 22 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGAT.......................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCGACGCAAATGTTTGTATGTTTAT....................................................... 25 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGACGCAAATGTTTGTATGTTTTA....................................................... 24 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTTACT....................................................... 25 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCTAATGTTTGTATGTTT......................................................... 23 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATGTATA........................................................ 24 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TTTGACGCAAATGTTTGTATGTTA......................................................... 24 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGAAGCAAATGTTTGTATGTT.......................................................... 22 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................TTGACGCAAATGGTTGTATGTTAT........................................................ 24 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGGCGCAAATGTTTGTATGT........................................................... 21 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTCGTATGTTA......................................................... 23 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTTTATGT........................................................... 21 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGTATTTTA......................................................... 23 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CTGACGCAAATGTTAGTATGTTA......................................................... 23 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGACGCAAATGTTTGT............................................................... 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CCACCCACAAAACATGGCACTCAATTGGCT......................... 30 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................TTGACGCAAATGATTGTATATT.......................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CAGTTCCAAATTTCTCGGGATGAGTCGGTTTGTAAACAATAACAATTCCGGACCGATTTGTAAGTTTGTACAAACAGTTTGTAAAGCAAACTGCGTTTACAAACATACAAATCGGTGGGTGTTTTGTACCGTGAGTTAACCGAAGGTGTTGTGCATGTCTACAAACTT
***********************************((((((.(((..((..(((((((((((.(((((((...((((((((.....))))))))...))))))).))))))))))).))....))))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039757
"Gastrula, oxidized"		 SRR039729
"Blastula, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039755
"Adult males, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"
.........................................................TTGTAAGTTTGTACAAACAGTT......................................................................................... 22 0 20 0.15 3 0 2 0 0 0 0 1 0 0 0
.................................................GGACCGATTTGTAAGTTTGTACAAACAGT.......................................................................................... 29 0 20 0.15 3 0 0 1 0 0 1 0 1 0 0
.................................................GGACCGATTTGTAATTTTGTACAAACAGT.......................................................................................... 29 1 20 0.10 2 0 0 0 1 0 0 0 0 0 1
......................................................................................................................GTATTTTGTACCGTGAGTTAACCGAAGGT..................... 29 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.................................................GGACCGATTTGTAACTTTGTACAAACAGT.......................................................................................... 29 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
................................................CGGACCTATTTGTAAGTTTGTACAAGCAGT.......................................................................................... 30 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................ACCGTGAGTTAACCGAAGGTGTTTT................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................CGGACCGATTTGTAACTTTGTACAAACAGT.......................................................................................... 30 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Generated: 08/21/2014 at 10:25 AM