ID:

nve-mir-9435

 Coordinate:

scaffold_37:465886-465953 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.0 -39.7 -39.7

Sense Strand Reads

GACGACACGCAAAGGAGTGGTGCCTACATCCGGGATACTTACATCGTTGCACGCTGAGCTCTTGTCAAGTGTATCTAGTGTGAGTCACGTGCTAGAGACACGTGACTGGTGCTCAGCGGGGCAGGGCGAGTCGGTATGAGGTTAGTAGTTGTGTCGTGAGTTTAAGGT
********************************************..((((.((((((((.((.((((.((((.(((((((((...)))..)))))).)))).)))).)).))))))))..))))...***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"
...........................................................TCTTGTCAAGTGTATCTAGTGTG...................................................................................... 23 0 1 39.00 39 26 12 0 0 0 1
.........................................................................................TGCTAGAGACACGTGACTGGTGC........................................................ 23 0 1 22.00 22 6 15 0 0 1 0
.........................................................................................TGCTAGAGACACGTGACTGGTGCT....................................................... 24 0 1 17.00 17 8 9 0 0 0 0
.........................................................................................TGCTAGAGACACGTGACTGGTG......................................................... 22 0 1 11.00 11 4 7 0 0 0 0
...........................................................TCTTGTCAAGTGTATCTAGTGT....................................................................................... 22 0 1 9.00 9 7 2 0 0 0 0
.........................................................................................TGCTAGAGACACGTGACTGGT.......................................................... 21 0 1 7.00 7 1 6 0 0 0 0
...........................................................TCTTGTCAAGTGTATCTAGTGTGT..................................................................................... 24 1 1 5.00 5 2 3 0 0 0 0
.........................................................................................TGCTAGAGACACGTGACTGGTGCTT...................................................... 25 1 1 4.00 4 3 1 0 0 0 0
.........................................................................................TGCTAGAGACACGTGACTGG........................................................... 20 0 1 3.00 3 1 2 0 0 0 0
...........................................................TCTTGTCAAGTGTATCTAGTTTG...................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0
.........................................................................................TTCTAGAGACACGTGACTGGTGCT....................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................TGCTAGAGACACGTGACTGGTGT........................................................ 23 1 1 2.00 2 1 1 0 0 0 0
...........................................................TCTTGTCCAGTGTATCTAGTGT....................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...........................................................TCTTGTCGAGGGTATCTAGTGTG...................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGCTAGAGACACGTGACGGGTGC........................................................ 23 1 1 1.00 1 0 1 0 0 0 0
...........................................................TCTGGTCAAGTGTAGCTAGTGTG...................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................TAATAGAGACACGTGACTGGT.......................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGCTAGAGACACGTGACTG............................................................ 19 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TTCTAGAGACACGTGACTTGTTC........................................................ 23 3 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGCTAGAGACACGTGACTGGTTT........................................................ 23 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGCTAGAGACACGCGACTGGCGCC....................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...........................................................TCTTGTCAAGGGTATCTAGTGTG...................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGCTAGAGACACGTGGCTGGTGC........................................................ 23 1 1 1.00 1 0 1 0 0 0 0
...........................................................TCTTGTCAAGTTTGTCTAGTGTG...................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGCTAGAGACACGTGACTGGTGTA....................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................TCTTGCCAAGTGTATCTAGTGT....................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TGCTAGAGACACGTGACTTGCGCTT...................................................... 25 3 1 1.00 1 0 1 0 0 0 0
...........................................................CCTTGTCAAGTGTATCTAGTGTG...................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGCTAGAGATACGAGACTGGTG......................................................... 22 2 1 1.00 1 0 0 1 0 0 0
............................................................CTTGTCAAGTGTATCTAGTGT....................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................TCTTGTCAAGTGTATCTAGTGTTT..................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGCTAGAGACACGCGACTGGTTC........................................................ 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTAGAGACACGTGACTGGTGC........................................................ 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................TGATAGAGACACGTGACTGGT.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0

Anti-sense strand reads

CTGCTGTGCGTTTCCTCACCACGGATGTAGGCCCTATGAATGTAGCAACGTGCGACTCGAGAACAGTTCACATAGATCACACTCAGTGCACGATCTCTGTGCACTGACCACGAGTCGCCCCGTCCCGCTCAGCCATACTCCAATCATCAACACAGCACTCAAATTCCA
*****************************************..((((.((((((((.((.((((.((((.(((((((((...)))..)))))).)))).)))).)).))))))))..))))...******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039731
"Adult females, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"
....................................................................................................................GCCGCGGCCCGCTCAGCCCTAC.............................. 22 3 1 1.00 1 1 0 0
.................ACCACGGATTTGGGCCCT..................................................................................................................................... 18 2 4 0.50 2 0 1 1
.......................GATGTATGCCCTAAGAGTG.............................................................................................................................. 19 3 20 0.05 1 1 0 0

Generated: 08/21/2014 at 10:06 AM