ID:

nve-mir-9433

 Coordinate:

scaffold_397:57292-57359 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.8 -36.8
mature
  1. scaffold_397:57299-57321 +
  2. scaffold_225:40304-40326 +
star
  1. scaffold_397:57334-57356 +
  2. scaffold_225:40339-40361 +

Sense Strand Reads

gactattatttccacgtttaagagatttagaacgcatttggggccgtttaagcgatgttcggtgaaatttagaaCCACTAagtgatatagggaattctaaatttcaccgtacgctaaaacggcTGTTAATAGTTACCGTAAGGTGATAATATGTAATTACGACCAAAT
******************************************(((((((.((((.....(((((((((((((((((.(((.......)))))..)))))))))))))))..)))).))))))).......************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039731
"Adult females, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039754
"Adult males, untreated"		 SRR039758
"Early planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039760
"Late planula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039732
"Adult females, oxidized"		 SRR039755
"Adult males, oxidized"
.........................................................TTCGGTGAAATTTAGAACCACTA........................................................................................ 23 0 2 34.50 69 13 16 12 9 9 3 2 4 1 0 0 0
.........................................................TTCGGTGAAATTTAGAACCACT......................................................................................... 22 0 2 27.50 55 14 11 11 7 6 2 2 1 1 0 0 0
.........................................................TTCGGTGAAATTTAGAACCA........................................................................................... 20 0 2 10.50 21 10 2 8 1 0 0 0 0 0 0 0 0
..........................................................TCGGTGAAATTTAGAACCACT......................................................................................... 21 0 2 3.50 7 2 2 1 1 1 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACCAC.......................................................................................... 21 0 2 2.50 5 2 1 1 1 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACCACTAT....................................................................................... 24 1 2 2.50 5 1 2 0 0 1 0 1 0 0 0 0 0
............................................................................................AATTCTAAATTTCACCGTACGCT..................................................... 23 0 2 2.00 4 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................AATTCTAAATTTCACCGTACGC...................................................... 22 0 2 2.00 4 1 1 0 0 0 0 0 0 0 1 1 0
...........................................................CGGTGAAATTTAGAACCACT......................................................................................... 20 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGCAATTTAGAACCACT......................................................................................... 22 1 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACCACTAA....................................................................................... 24 0 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAGCCA........................................................................................... 20 1 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................AATTCTAAATTTCACCGTA......................................................... 19 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTACAACCACT......................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGCGAAATTTAGAACCACTA........................................................................................ 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
................TTTAAGAGATTTAGAACGCA.................................................................................................................................... 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................GGGAATTCTAAATTTCACCGTACGC...................................................... 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................TTCTGAATTTCACCGTACGCT..................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TCGGTGAAATTTAGAACCAC.......................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................AGAACCACTAAGTGATATAGA............................................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................GAAATTTAGAACCACTA........................................................................................ 17 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................TTCGTTGAAATTTAGAACCACTAT....................................................................................... 24 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TGCGGTGAAATTTAGAACCA........................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATCGGTGAAATTTAGAACCAC.......................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................TCGGTGAAATTTAAAACCACT......................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................TCGGTGAAATTTAGAACCACTA........................................................................................ 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGCACCACTA........................................................................................ 23 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACCACTATATA.................................................................................... 27 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................CTCGGTGAACTTTAGAACCACTA........................................................................................ 23 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGTACCACT......................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................AATTCTAAATTTCACACTCCGCT..................................................... 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACCAATA........................................................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTTGGTGAAATTTAGAACCA........................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTAAAATTTAGAACCACTAT....................................................................................... 24 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAATCACT......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAAACACTAT....................................................................................... 24 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACCACTTT....................................................................................... 24 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................TTCGGGGAAATTTAGAACCACTAT....................................................................................... 24 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................GGTGAAATTTAGAACCACTAA....................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................GAATTCTAAATTTCACCGTA......................................................... 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................TTGGTGAAATTTAGAACCACT......................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGGGAAATTTAGAACCACT......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GGGAATTCTAAATTTCACAGTACGC...................................................... 25 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACCACTATA...................................................................................... 25 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TTCGGGGAAATTTAGAACCACTA........................................................................................ 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGGACCA........................................................................................... 20 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................GAATTCTAAATTTCACCGTAT........................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACC............................................................................................ 19 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACCACTAAA...................................................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACCACTATTTA.................................................................................... 27 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGCGAAATTTAGAACCACT......................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TTCGTTGAAATTTAGAACCACTA........................................................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................TCGGTGAAATTTAGAACTACT......................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................ATTCTAAATTTCACCGTACGCT..................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACCCCTA........................................................................................ 23 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TTCGGAGAAATTTAGAACCACT......................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTGGGGGAAATTTAGAACCACT......................................................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTAGGTGAAATTGAGAACCACT......................................................................................... 22 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TTCGGGGAAATTTAGAACCAATAT....................................................................................... 24 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................TTCGGAGAAATTTAGAACCA........................................................................................... 20 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTAGAACTA........................................................................................... 20 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AATTCTAAATTTCACCGTACT....................................................... 21 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................TGAAATTTAGAACCACTATT...................................................................................... 20 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................AATTTCATCGTACGC...................................................... 15 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................ATTCTAAATGTCACCGTACT....................................................... 20 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TTCGGTGAAATTTATAACAA........................................................................................... 20 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.....TTGTTTCCACGTTTAAGAGATT............................................................................................................................................. 22 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................ATGCTCGGCGAAATTGAGA............................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

gTGtTttTtttGGTGgtttTTgTgTtttTgTTGgGTtttggggGGgtttTTgGgTtgttGggtgTTTtttTgTTGGTGATTgtgTtTtTgggTTttGtTTTtttGTGGgtTGgGtTTTTGggGACAATTATCAATGGCATTCCACTATTATACATTAATGCTGGTTTA
**************************************(((((((.((((.....(((((((((((((((((.(((.......)))))..)))))))))))))))..)))).))))))).......****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039731
"Adult females, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"
........................................................................................TCCCTTAAGATTTAAAGTGGCA.......................................................... 22 0 2 1.50 3 3 0 0 0 0 0
.......................................................................................ATCCCTTAAGATTTAAAGTGGCAT......................................................... 24 0 2 1.00 2 0 0 0 1 1 0
..........................................................................................TCTTAAGATTTAAAGTGGCAT......................................................... 21 1 2 0.50 1 0 1 0 0 0 0
.......................................................TCAAGCCACTTTAAATCTTGGTG.......................................................................................... 23 1 2 0.50 1 0 0 1 0 0 0
........................................................................................TCCCTTAAGATTTAAAGTGGCAT......................................................... 23 0 2 0.50 1 0 0 1 0 0 0
.......................................................GCATGCCACTTTAAATCTTGGTG.......................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0
..................................................................................ACTATATCCCTTAAGATTTAA................................................................. 21 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................................................AATGGCATTCCACTATTAT................. 19 0 4 0.25 1 0 1 0 0 0 0
.......................................................................................TTCCCTTAAGATTTAAAGTGGCA.......................................................... 23 1 6 0.17 1 0 0 0 0 0 1
........................................................................................TCCCTTAAGATTTAAAGTGGC........................................................... 21 0 20 0.05 1 1 0 0 0 0 0

Generated: 08/21/2014 at 10:25 AM