ID:

nve-mir-9431

 Coordinate:

scaffold_106:684146-684213 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.1 -18.8 -17.8
mature
  1. scaffold_7208:33-51 +
  2. scaffold_5947:6603-6621 +
  3. scaffold_707:16955-16973 +
  4. scaffold_707:17663-17681 +
  5. scaffold_572:29483-29501 +
  6. scaffold_459:66473-66491 +
  7. scaffold_246:122378-122396 +
  8. scaffold_246:323411-323429 +
  9. scaffold_246:326331-326349 +
  10. scaffold_188:308321-308339 +
  11. scaffold_177:364010-364028 +
  12. scaffold_154:73996-74014 +
  13. scaffold_148:549413-549431 +
  14. scaffold_76:354130-354148 +
  15. scaffold_44:974128-974146 +
  16. scaffold_38:340015-340033 +
  17. scaffold_42:1143534-1143552 +
  18. scaffold_37:440511-440529 +
  19. scaffold_25:1428450-1428468 +
  20. scaffold_2:1268391-1268409 +
  21. scaffold_2068:15507-15525 +
  22. scaffold_595:70083-70101 +
  23. scaffold_463:118930-118948 +
  24. scaffold_432:81036-81054 +
  25. scaffold_438:55067-55085 +
  26. scaffold_370:187635-187653 +
  27. scaffold_248:235824-235842 +
  28. scaffold_246:224482-224500 +
  29. scaffold_243:120228-120246 +
  30. scaffold_170:330483-330501 +
  31. scaffold_140:76420-76438 +
  32. scaffold_134:549756-549774 +
  33. scaffold_110:315330-315348 +
  34. scaffold_106:684187-684205 +
  35. scaffold_90:35307-35325 +
  36. scaffold_29:1487166-1487184 +
  37. scaffold_11913:215-233 +
  38. scaffold_2975:11380-11398 +
  39. scaffold_2312:168-186 +
  40. scaffold_1479:184-202 +
  41. scaffold_511:15189-15207 +
  42. scaffold_506:13529-13547 +
  43. scaffold_376:109350-109368 +
  44. scaffold_291:91496-91514 +
  45. scaffold_202:186779-186797 +
  46. scaffold_191:128235-128253 +
  47. scaffold_122:318375-318393 +
  48. scaffold_101:333625-333643 +
  49. scaffold_95:301810-301828 +
  50. scaffold_93:328002-328020 +
  51. scaffold_84:337863-337881 +
  52. scaffold_27:42111-42129 +
  53. scaffold_22:646419-646437 +
  54. scaffold_19:188074-188092 +
  55. scaffold_19:640616-640634 +
  56. scaffold_4:1170034-1170052 +
star

Sense Strand Reads

ACATTGGACGAAAAAATACGGAATACGGAgcacactagcatacacatattagcaccagtcgcgctaagcttagctttagatcccacatggataagctgtggtttaaagcactttgtccgagtcgaattcgccctgcagtttattgccgataaagtttatctaaggcaa
***********************************................(((..(((.((..((((((((((((...((((.....)))))))))).))))))..))))).))).(((((...)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039731
"Adult females, untreated"		 SRR039754
"Adult males, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039756
"Gastrula, untreated"
...........................................................................................TAAGCTGTGGTTTAAAGCA.......................................................... 19 0 20 0.35 7 7 0 0 0 0
..........................................................................TCTAGATCCCACATGGATAA.......................................................................... 20 1 4 0.25 1 0 0 1 0 0
...........................................................................................TAAGCTGTGGTTTAAAGCT.......................................................... 19 1 20 0.10 2 0 2 0 0 0
...........................................................................................TAAGCTGTGGTTTAAAGCACTAT...................................................... 23 1 11 0.09 1 1 0 0 0 0
...........................................................................................TAAGCTGTGGTTTAAAGCACAAT...................................................... 23 2 11 0.09 1 0 1 0 0 0
..........................................................................TCTAGGTCCCACATGGATAA.......................................................................... 20 2 15 0.07 1 0 1 0 0 0
...........................................................................TTAGATCTCACATGAATAAAC........................................................................ 21 3 16 0.06 1 0 0 0 1 0
...........................................................................................TAAGCTGTGGTTTAAAGCAC......................................................... 20 0 20 0.05 1 0 0 0 0 1
.......................................................................AGCTCTAGATCCCACATGGATA........................................................................... 22 1 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TGTAACCTGCTTTTTTATGCCTTATGCCTgGTGTGtTgGTtTGTGTtTttTgGTGGTgtGgGgGtTTgGttTgGtttTgTtGGGTGTtggTtTTgGtgtggtttTTTgGTGtttgtGGgTgtGgTTttGgGGGtgGTgtttTttgGGgTtTTTgtttTtGtTTggGTT
***********************************................(((..(((.((..((((((((((((...((((.....)))))))))).))))))..))))).))).(((((...)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039758
"Early planula, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039764
"Primary polyps, untreated"
.........................................................................................................................AGCTTAAGCGGGACGTCAA............................ 19 0 4 0.25 1 1 0 0 0 0
...................................................................................................................ATTCTCAGCTTAAGCGGGCCG................................ 21 3 9 0.11 1 0 1 0 0 0
.....................................................................AATCGAGATCTAGGGTGTACCT............................................................................. 22 1 15 0.07 1 1 0 0 0 0
......................................................................................................AATTTCGTGAAACACGCTCAGCTT.......................................... 24 1 18 0.06 1 0 0 1 0 0
................................................................................................ACACCAAATTTCGTGAAAC..................................................... 19 0 20 0.05 1 0 0 0 1 0
...............................................................................................................................AGCGGGGCGTCAAATAAGGC..................... 20 3 20 0.05 1 1 0 0 0 0
............................................................................................TTCGACACCAAATTTCGTGTA....................................................... 21 1 20 0.05 1 0 0 0 0 1

Generated: 08/21/2014 at 09:07 AM