ID:

nve-mir-9429

 Coordinate:

scaffold_64:787255-787322 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.1 -46.1 -45.4

Sense Strand Reads

ACGAGATGTGGAAATCGGGGAGCCGGGAGACGCAAAAGAGGATAAGTCTCCCTAAAAGCACCTTCTCCATTAGACGAAATAGACTTATTTCGTCTATATGGAGAAAGGCGCTTTTAGGGAAGTAGATATCAAATCCATTTGAAGAGAAGTGATCTAATGTCTGGTAAC
********************************************....(((((((((((.(((((((((((((((((((((....))))))))))).)))))).)))).)))))))))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039729
"Blastula, oxidized"		 SRR039731
"Adult females, untreated"
........................................................................................TTCGTCTATATGGAGAAAGG............................................................ 20 0 1 31.00 31 21 7 2 0 1 0
.......................................................................................TTTCGTCTATATGGAGAAAGG............................................................ 21 0 1 24.00 24 11 11 1 1 0 0
........................................................................................TTCGTCTATATGGAGAAAGGC........................................................... 21 0 1 12.00 12 6 5 0 0 0 1
........................................................................................TTCGTCTATATGGAGAAAGGCGC......................................................... 23 0 1 12.00 12 8 4 0 0 0 0
.......................................................................................TTTCGTCTATATGGAGAAAGGCGC......................................................... 24 0 1 11.00 11 8 3 0 0 0 0
........................................................................................TTCGTCTATATGGAGAAAGGCG.......................................................... 22 0 1 10.00 10 8 1 0 0 1 0
.......................................................................................TTTCGTCTATATGGAGAAAGGCG.......................................................... 23 0 1 7.00 7 3 3 1 0 0 0
...........................................................ACCTTCTCCATTAGACGAAA......................................................................................... 20 0 1 6.00 6 6 0 0 0 0 0
.......................................................................................TTTCGTCTATATGGAGAAAG............................................................. 20 0 1 6.00 6 5 1 0 0 0 0
.......................................................................................TTTCGTCTATATGGAGAAAGGC........................................................... 22 0 1 5.00 5 1 4 0 0 0 0
........................................................................................TTCGTCTATATGGAGAAAG............................................................. 19 0 1 5.00 5 5 0 0 0 0 0
...........................................................ACCTTCTCCATTAGACGAAAT........................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0
.......................................................................................TTTCGGCTATATGGAGAAAGG............................................................ 21 1 1 2.00 2 0 2 0 0 0 0
...........................................................ACCTTCTCCATTAGACGAAATA....................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
........................................................................................TTCGTCTATATGGAGAAAGGCGCT........................................................ 24 0 1 2.00 2 0 2 0 0 0 0
........................................................................................TTCGTCTATATGGAGAAAGGCGCA........................................................ 24 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................TTTCGTCTATATGTAGAAAGGCGC......................................................... 24 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................TGTCGTCTAGATGGAGAAAGGCGCTTAT..................................................... 28 3 1 1.00 1 1 0 0 0 0 0
........................................................................................TTCGTCTATATGGACAAAGGC........................................................... 21 1 1 1.00 1 0 1 0 0 0 0
........................................................................................TGCGACTATATGGAGAAAGG............................................................ 20 2 1 1.00 1 0 1 0 0 0 0
...........................................................ACCTTCTCTATTAGACGAAATA....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TTCGTCGATATGGAGAAAGG............................................................ 20 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................TATATGGAGAAAGGCGCT........................................................ 18 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................TGTCGTGTATATGGAGAAAGGCG.......................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................TTTCGTCTATATGGAGAAGG............................................................. 20 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TTAGGCTATATGGAGAAAGGCG.......................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................TTTCGTCTATATGGAGAAAGGCGCT........................................................ 25 0 1 1.00 1 1 0 0 0 0 0
........................................................................................TTCGGCTATATGGAGAAAGG............................................................ 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................TCTCGTCTATATGGAGAAAG............................................................. 20 1 1 1.00 1 1 0 0 0 0 0
...........................................................ACCTTCTCCGTTAGACGAAAT........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TTCGGCTATATGGAGAAAGGCGC......................................................... 23 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................TTTCGTCTATATGGAGAAAGGCGTT........................................................ 25 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................TTTCGTCTATATGGATAAAGG............................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................ACCTTCTCCATTAGACGAAATAGACTTA................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................TTTCGTCTATATGGAGAAAGGCCC......................................................... 24 1 1 1.00 1 0 1 0 0 0 0
........................................................................................TTCGTATATATGGAGAAAGGCG.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0
........................................................................................TTCGTATATATGGAGAAAGGAGC......................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................GTTCGTCTATATGGAGAAATG............................................................ 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................TTTCGGCTATATGGAGAAAGGCGCT........................................................ 25 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................TTTCGGGTATATGGAGAAAGGC........................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................ACCTTTTCCATTAGACGAAATA....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................ACCTTCTCCATTAGACGAAATT....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................TTTCGTCTATATGGAGAAAGGCT.......................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................ACCTTCTCCCTTAGACGAAA......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TTTGACTATATGGAGAAAGGCGT......................................................... 23 3 2 0.50 1 0 1 0 0 0 0
.......................................................................................TGTAGTCTAGATGGAGAAAGGC........................................................... 22 3 2 0.50 1 1 0 0 0 0 0
.......................................................................................TTTCGTCTCTCTGGAGCAAGG............................................................ 21 3 7 0.14 1 1 0 0 0 0 0
........................................................................................TGCGTGTATATGGAGAAAG............................................................. 19 2 8 0.13 1 1 0 0 0 0 0
...................................................CGAAAAGCACCTTCT...................................................................................................... 15 1 18 0.06 1 0 1 0 0 0 0

Anti-sense strand reads

TGCTCTACACCTTTAGCCCCTCGGCCCTCTGCGTTTTCTCCTATTCAGAGGGATTTTCGTGGAAGAGGTAATCTGCTTTATCTGAATAAAGCAGATATACCTCTTTCCGCGAAAATCCCTTCATCTATAGTTTAGGTAAACTTCTCTTCACTAGATTACAGACCATTG
*********************************************....(((((((((((.(((((((((((((((((((((....))))))))))).)))))).)))).)))))))))))...******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"
.................CTCTCGGCCCTCTGCGC...................................................................................................................................... 17 2 11 0.09 1 1 0
..............................................................................................................................................TCTCTTCGCTAGATT........... 15 1 18 0.06 1 0 1

Generated: 08/21/2014 at 10:32 AM