ID:nve-mir-9427 |
Coordinate:scaffold_169:47209-47276 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
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AATGAATGTATGGAGAAAAGAATGTTGATTAGAAACGCTAATGATTGCTGCCAGCATACACCGCAACCTCACTTCCCTCCTCTGTCAGGAAGAGACCAGTGAGATTGAAGTGAATGCTGTGTATGTGATTGAGCGATGGAGGGAAGTCTTAGTAAGAAAATGCGATTG
**********************************************(((((((((((.(((..(((.((((((...(((.(((....))).)))...)))))).)))..))).)))))).))).))..**************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR039755 "Adult males, oxidized" |
SRR039754 "Adult males, untreated" |
SRR039731 "Adult females, untreated" |
SRR039758 "Early planula, untreated" |
SRR039765 "Primary polyps, oxidized" |
SRR039732 "Adult females, oxidized" |
SRR039759 "Early planula, oxidized" |
SRR039763 "Metamorphosing individuals, oxidized" |
SRR039760 "Late planula, untreated" |
SRR039761 "Late planula, oxidized" |
SRR039726 "Blastula, untreated" |
SRR039764 "Primary polyps, untreated" |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................AGAGACCAGTGAGATTGAAGTGA....................................................... | 23 | 0 | 1 | 180.00 | 180 | 95 | 63 | 4 | 4 | 4 | 4 | 2 | 2 | 1 | 0 | 0 | 1 |
| ..........................................................................................AGAGACCAGTGAGATTGAAGT......................................................... | 21 | 0 | 1 | 11.00 | 11 | 3 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAGGTGA....................................................... | 23 | 1 | 1 | 7.00 | 7 | 1 | 2 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAGTT........................................................ | 22 | 1 | 1 | 5.00 | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAGTTTT...................................................... | 24 | 3 | 1 | 5.00 | 5 | 4 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAGTTT....................................................... | 23 | 2 | 1 | 5.00 | 5 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGCGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 4.00 | 4 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAGTG........................................................ | 22 | 0 | 1 | 4.00 | 4 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGA............................................................ | 18 | 0 | 1 | 3.00 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAGTGT....................................................... | 23 | 1 | 1 | 3.00 | 3 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAGGGA....................................................... | 23 | 1 | 1 | 3.00 | 3 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................GGAGACCAGTGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 2.00 | 2 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGCAGTGA....................................................... | 23 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................AGACCAGTGAGATTGAAGTGA....................................................... | 21 | 0 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAG.......................................................... | 20 | 0 | 1 | 2.00 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................CAGTGAGATTGAAGTGA....................................................... | 17 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACAAGTGAGATTGAAGT......................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAGTGATTT.................................................... | 26 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................GAGACCAGTGAGATTGAAGTGAT...................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCATTGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCCGTGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................ACAGACCAATGAGATTGAAGTGA....................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGATACCAGTGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTTAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGGGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTAAAGT......................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................ACCAGTGAGATTGAAGTGA....................................................... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................CGAGACCAGTGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTTAGATTGAAGTTT....................................................... | 23 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAGGGGA....................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGATCAGTGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAGTGAT...................................................... | 24 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAA........................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGCGAGCTTGAAGTGA....................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGGGAGATTGAAGTGG....................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACAAGTGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAGGTGT....................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................CGAGACCACTGACATTGAAGTGA....................................................... | 23 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................GGAGACCAGTGAGATTGAGGTGA....................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAGG......................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGAGCAGTGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................CGCAACCTCACTTCCCTCCT....................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGAGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCCGTGCGATTGACGTGA....................................................... | 23 | 3 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ........................................................................................TCAGAGACCAGTGAGATTGAAGT......................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................ATAGACCAGTGAGATTGAAGTGAT...................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................ACCGCAGCCTCACTTCCCTCCTCT..................................................................................... | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGGGACCAGTGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AAAGACCAGTGAGATTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGACTGAAGTGA....................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACTAGTGAGATTGAAGGGAT...................................................... | 24 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGAGCAGTGAGATGGAAGTGA....................................................... | 23 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGAGAGTTTGAAGT......................................................... | 21 | 2 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAAA.......................................................... | 20 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGGGAGATGGAAGTGA....................................................... | 23 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGTGAGATTGAG........................................................... | 19 | 1 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGCGAGATTGAGGTT........................................................ | 22 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....ATGTATGGAGCAAAGAAT................................................................................................................................................. | 18 | 1 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................AGAGACCAGGGAGAGGGAAGTGA....................................................... | 23 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................TTTCTGCCATCATACATCGC........................................................................................................ | 20 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
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TTACTTACATACCTCTTTTCTTACAACTAATCTTTGCGATTACTAACGACGGTCGTATGTGGCGTTGGAGTGAAGGGAGGAGACAGTCCTTCTCTGGTCACTCTAACTTCACTTACGACACATACACTAACTCGCTACCTCCCTTCAGAATCATTCTTTTACGCTAAC
****************************************(((((((((((.(((..(((.((((((...(((.(((....))).)))...)))))).)))..))).)))))).))).))..********************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total |
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Generated: 08/21/2014 at 09:27 AM