ID:

nve-mir-9424b

 Coordinate:

scaffold_64:776987-777054 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-57.1 -56.8 -56.7
mature
  1. scaffold_1498:5557-5578 +
  2. scaffold_64:777026-777047 +
star

Sense Strand Reads

TCACGTGTGCTGTCGAGGCTGTAATTGAAACAGTCTTGGACATACCGTCATTTAAGACTGCCTCGATGAGCCAACTATACAGATATCTGTAAAGCTGGTTTATCGAGGCAGTCTTTAAGGACGGTGTCTGATGAGCTTGCAGCGCCTCGCATCTCATTGTGGTCTTTT
***********************************((((((..((((((....((((((((((((((((((((.((.(((((....))))).)).))))))))))))))))))))....))))))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039726
"Blastula, untreated"
.........................................................................................TAAAGCTGGTTTATCGAGGCAG......................................................... 22 0 2 37.50 75 36 26 1 3 2 2 1 1 1 2 0
.........................................................................................TAAAGCTGGTTTATCGAGG............................................................ 19 0 2 6.00 12 7 5 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGAGGCA.......................................................... 21 0 2 5.50 11 8 2 0 0 0 0 1 0 0 0 0
..........................................................................................AAAGCTGGTTTATCGAGGCAGT........................................................ 22 0 2 2.50 5 2 3 0 0 0 0 0 0 0 0 0
..........................................................................................AAAGCTGGTTTATCGAGGCAG......................................................... 21 0 2 2.50 5 1 3 0 1 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGAGGCAGT........................................................ 23 0 2 2.00 4 3 0 0 0 0 0 0 1 0 0 0
.........................................................................................TAAAGCTGGTTTATCGAGGTAG......................................................... 22 1 2 1.50 3 1 2 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGAGT............................................................ 19 1 2 1.50 3 1 0 2 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGAGA............................................................ 19 1 2 1.00 2 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................TAAAGCTGGTTTATCGAG............................................................. 18 0 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGAGGC........................................................... 20 0 2 1.00 2 0 1 0 0 0 0 1 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGAGGCAT......................................................... 22 1 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGATGCAG......................................................... 22 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGATA............................................................ 19 2 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................AAAGCTGGTTTATCGAGGCA.......................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCGGGTTTAGCGAGGCA.......................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCGGGCTTATCGAGGCAA......................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGATTCAT......................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................AGCTGGTTTATCGAGGCAG......................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGAGGCGG......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................AAAGCTGGTTTATCGAGG............................................................ 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCTAGGCAT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................AAAGCTGGTTTATCGAGGCAGTT....................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGAGACAG......................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................TAAAGCTGGTTTATCTAGGCAG......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................AGCTGGTTTATCGAGGTA.......................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TAACGCTGGTTTATCGTGGCTG......................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................TAAAGCTGGTTTATCGA.............................................................. 17 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGTTGGTTTATCGAGGCAG......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTCTATCGAGGC........................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGCTGGGTTATCGCGGCAG......................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TAAAGCTGGTTTATCGAGGA........................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAGAGCTGGTTTATCGGGGCAT......................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTGCACACGACAGCTCCGACATTAACTTTGTCAGAACCTGTATGGCAGTAAATTCTGACGGAGCTACTCGGTTGATATGTCTATAGACATTTCGACCAAATAGCTCCGTCAGAAATTCCTGCCACAGACTACTCGAACGTCGCGGAGCGTAGAGTAACACCAGAAAA
***********************************((((((..((((((....((((((((((((((((((((.((.(((((....))))).)).))))))))))))))))))))....))))))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039726
"Blastula, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"
........................................................TGACGGAGCTACTCGGTTGATAT......................................................................................... 23 0 2 142.50 285 151 115 6 6 2 3 1 1 0
.........................................................GACGGAGCTACTCGGTTGATAT......................................................................................... 22 0 2 13.00 26 16 10 0 0 0 0 0 0 0
............................................................GGAGCTACTCGGTTGATAT......................................................................................... 19 0 2 3.00 6 3 3 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTCGGTTGATA.......................................................................................... 22 0 2 2.00 4 2 1 0 0 1 0 0 0 0
..........................................................ACGGAGCTACTCGGTTGATAT......................................................................................... 21 0 2 2.00 4 2 2 0 0 0 0 0 0 0
........................................................TGACGTAGCTACTCGGTTGATAT......................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0 0 0
........................................................TGACGGAGTTACTCGGTTGATAT......................................................................................... 23 1 2 1.50 3 1 2 0 0 0 0 0 0 0
........................................................GGACGGAGCTACTCGGTTGATAT......................................................................................... 23 1 2 1.50 3 2 1 0 0 0 0 0 0 0
........................................................TGAAGGAGCTACTCGGTTGATAT......................................................................................... 23 1 2 1.00 2 1 1 0 0 0 0 0 0 0
........................................................TGACTGAGCTACTCGGTTGATAT......................................................................................... 23 1 2 1.00 2 1 1 0 0 0 0 0 0 0
........................................................CGACGGAGCTACTCGGTTGATAT......................................................................................... 23 1 2 1.00 2 1 0 1 0 0 0 0 0 0
........................................................TGACGGAGCTACTCGGTGGATAT......................................................................................... 23 1 2 1.00 2 1 1 0 0 0 0 0 0 0
.......................................................TTGACGGAGCTACTCGGTTGATAT......................................................................................... 24 1 2 1.00 2 1 1 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTCGGTCGATAT......................................................................................... 23 1 3 0.67 2 0 2 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTCTTTTGATAT......................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGACAGAGCTACTCGGTTGATAT......................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGACGGAGCTCCTCGGTTGATAT......................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTAGGTTGTT........................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTCGGTTGATGT......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................ACGGAGATACTCGGTTGATAT......................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGACTGAGCTACTCCGTTGATAT......................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................................ATGGAGCTACTCGGTTGATAT......................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTCGGTTGATAC......................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTGGGTTGATAT......................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGACGGAGCTACCCGGTTGATAT......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................GACGGAGCTACTTGGTTGATAT......................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGACGGTGCTACTCGGTGGATAT......................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TTACGGAGCTACTCGGTTGATAT......................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGACGTAGCTACTCGTTTGATAT......................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TTACGGAGCTACTCGGTTGATA.......................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................GGAGCTGCTCGGTTGATAT......................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTCGTTTGATAT......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTCGGTTGACAT......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................AGGGAGCTACTCGGTGGATAT......................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGATGGAGCTACTCGGTTGATAT......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................TGACGGAGCTACGCGGTTGATAT......................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTCGGTAGATAT......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................TGACGGAGCTACTCGGCTGATAT......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................GAGGGAGCTACCCGGTTGAGAT......................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................TGACGGTGCTACTCGGTTGATAT......................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.....................................................TTTTGACGGAGCTACTCGGTTGATAT......................................................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................GGACGGAGCAACTCGGTTGATAT......................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................TGACGGAGCTACCCGGTCGATAT......................................................................................... 23 2 3 0.33 1 0 1 0 0 0 0 0 0 0
........................................................TGACGGAGATACGCGGTCGATAT......................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................CACAGACTACTCGCACAT........................... 18 2 13 0.08 1 0 0 0 0 0 0 1 0 0
.........................ATTTCGTCAGAACCTGT.............................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 08/21/2014 at 10:37 AM