ID:

nve-mir-9424a

 Coordinate:

scaffold_64:776987-777054 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-51.9 -51.2 -51.1
mature
  1. scaffold_1498:5524-5546 -
  2. scaffold_64:776993-777015 -
star

Sense Strand Reads

AAAAGACCACAATGAGATGCGAGGCGCTGCAAGCTCATCAGACACCGTCCTTAAAGACTGCCTCGATAAACCAGCTTTACAGATATCTGTATAGTTGGCTCATCGAGGCAGTCTTAAATGACGGTATGTCCAAGACTGTTTCAATTACAGCCTCGACAGCACACGTGA
***********************************.....(((((((((.((.((((((((((((((...((((((.(((((....))))).))))))...)))))))))))))).)).))))))..)))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039726
"Blastula, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"
.........................................................................................TATAGTTGGCTCATCGAGGCAGT........................................................ 23 0 2 142.50 285 151 115 6 6 2 3 1 1 0
.........................................................................................TATAGTTGGCTCATCGAGGCAG......................................................... 22 0 2 13.00 26 16 10 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGG............................................................ 19 0 2 3.00 6 3 3 0 0 0 0 0 0 0
..........................................................................................ATAGTTGGCTCATCGAGGCAGT........................................................ 22 0 2 2.00 4 2 1 0 0 1 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGGCA.......................................................... 21 0 2 2.00 4 2 2 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGATGCAGT........................................................ 23 1 2 2.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATTGAGGCAGT........................................................ 23 1 2 1.50 3 1 2 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGGCAGG........................................................ 23 1 2 1.50 3 2 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGGAAGT........................................................ 23 1 2 1.00 2 1 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGTCAGT........................................................ 23 1 2 1.00 2 1 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGGCAGC........................................................ 23 1 2 1.00 2 1 0 1 0 0 0 0 0 0
.........................................................................................TATAGGTGGCTCATCGAGGCAGT........................................................ 23 1 2 1.00 2 1 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGGCAGTT....................................................... 24 1 2 1.00 2 1 1 0 0 0 0 0 0 0
.........................................................................................TATAGCTGGCTCATCGAGGCAGT........................................................ 23 1 3 0.67 2 0 2 0 0 0 0 0 0 0
.........................................................................................TATAGTTTTCTCATCGAGGCAGT........................................................ 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGACAGT........................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCCTCGAGGCAGT........................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
...........................................................................................TTGTTGGATCATCGAGGCAGT........................................................ 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TGTAGTTGGCTCATCGAGGCAGT........................................................ 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATAGAGGCA.......................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGCCTCATCGAGTCAGT........................................................ 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGGTA.......................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................CATAGTTGGCTCATCGAGGCAGT........................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGGTCATCGAGGCAGT........................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCCCATCGAGGCAGT........................................................ 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGTTCATCGAGGCAG......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGGTGGCTCATCGTGGCAGT........................................................ 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGGCATT........................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTTGCTCATCGATGCAGT........................................................ 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................................................................ATAGTTGGCTCATCGAGGCATT........................................................ 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCGTCGAGG............................................................ 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATAGTTTGCTCATCGAGGCAGT........................................................ 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TACAGTTGGCTCATCGAGGCAGT........................................................ 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATAGGTGGCTCATCGAGGGA.......................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGGTAGT........................................................ 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCGCATCGAGGCAGT........................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGATGGCTCATCGAGGCAGT........................................................ 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATAGTCGGCTCATCGAGGCAGT........................................................ 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TAGAGTTGGCCCATCGAGGGAG......................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGTGGCAGT........................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCATCGAGGCAGTTTT..................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGTTGGCTCAACGAGGCAGG........................................................ 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TATAGCTGGCCCATCGAGGCAGT........................................................ 23 2 3 0.33 1 0 1 0 0 0 0 0 0 0
.........................................................................................TATAGCTGGCGCATAGAGGCAGT........................................................ 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................TACACGCTCATCAGACAC........................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................TGTCCAAGACTGCTTTA......................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTTTCTGGTGTTACTCTACGCTCCGCGACGTTCGAGTAGTCTGTGGCAGGAATTTCTGACGGAGCTATTTGGTCGAAATGTCTATAGACATATCAACCGAGTAGCTCCGTCAGAATTTACTGCCATACAGGTTCTGACAAAGTTAATGTCGGAGCTGTCGTGTGCACT
***********************************.....(((((((((.((.((((((((((((((...((((((.(((((....))))).))))))...)))))))))))))).)).))))))..)))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039726
"Blastula, untreated"
.........................................................GACGGAGCTATTTGGTCGAAAT......................................................................................... 22 0 2 37.50 75 36 26 1 3 2 2 1 1 1 2 0
............................................................GGAGCTATTTGGTCGAAAT......................................................................................... 19 0 2 6.00 12 7 5 0 0 0 0 0 0 0 0 0
..........................................................ACGGAGCTATTTGGTCGAAAT......................................................................................... 21 0 2 5.50 11 8 2 0 0 0 0 1 0 0 0 0
........................................................TGACGGAGCTATTTGGTCGAAA.......................................................................................... 22 0 2 2.50 5 2 3 0 0 0 0 0 0 0 0 0
.........................................................GACGGAGCTATTTGGTCGAAA.......................................................................................... 21 0 2 2.50 5 1 3 0 1 0 0 0 0 0 0 0
........................................................TGACGGAGCTATTTGGTCGAAAT......................................................................................... 23 0 2 2.00 4 3 0 0 0 0 0 0 1 0 0 0
.........................................................GATGGAGCTATTTGGTCGAAAT......................................................................................... 22 1 2 1.50 3 1 2 0 0 0 0 0 0 0 0 0
............................................................TGAGCTATTTGGTCGAAAT......................................................................................... 19 1 2 1.50 3 1 0 2 0 0 0 0 0 0 0 0
............................................................AGAGCTATTTGGTCGAAAT......................................................................................... 19 1 2 1.00 2 1 0 0 0 0 0 0 0 0 0 1
.............................................................GAGCTATTTGGTCGAAAT......................................................................................... 18 0 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0
...........................................................CGGAGCTATTTGGTCGAAAT......................................................................................... 20 0 2 1.00 2 0 1 0 0 0 0 1 0 0 0 0
.........................................................TACGGAGCTATTTGGTCGAAAT......................................................................................... 22 1 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0
.........................................................GACGTAGCTATTTGGTCGAAAT......................................................................................... 22 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
............................................................ATAGCTATTTGGTCGAAAT......................................................................................... 19 2 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0
..........................................................ACGGAGCTATTTGGTCGAAA.......................................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................ACGGAGCGATTTGGGCGAAAT......................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................AACGGAGCTATTCGGGCGAAAT......................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................TACTTAGCTATTTGGTCGAAAT......................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................GACGGAGCTATTTGGTCGA............................................................................................ 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................GGCGGAGCTATTTGGTCGAAAT......................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
............................................................GGAGCTATTTGGTCGAAA.......................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................TACGGATCTATTTGGTCGAAAT......................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................TTGACGGAGCTATTTGGTCGAAA.......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................GACAGAGCTATTTGGTCGAAAT......................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................GACGGATCTATTTGGTCGAAAT......................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................ATGGAGCTATTTGGTCGA............................................................................................ 18 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................GTCGGTGCTATTTGGTCGCAAT......................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................AGCTATTTGGTCGAAAT......................................................................................... 17 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................GACGGAGCTATTTGGTTGAAAT......................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................CGGAGCTATCTGGTCGAAAT......................................................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................GACGGCGCTATTGGGTCGAAAT......................................................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................AGGAGCTATTTGGTCGAAAT......................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................TACGGGGCTATTTGGTCGAGAT......................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0

Generated: 08/21/2014 at 10:37 AM