ID:

nve-mir-9422

Coordinate:

scaffold_22:211459-211526 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TCGACGTCACGTCAAGGCTCATCTGATGGATTACTGCGTAATAGAACCAGACCGCATGTCAGCGTTTCAAGTTTCCGTCAGTCATGGCTGACAGAAGATAGAAGCGCTGACATGTGGTCTGATGTCACATGATGAGCATGAGTGGATGGTGGCAGAGATATCTGAGCA
*********************************************..(((((((((((((((((((((...((((.((((((....)))))).))))...)))))))))))))))))))))....*******************************************
Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"
SRR039755
"Adult males, oxidized"
SRR039762
"Metamorphosing individuals, untreated"
SRR039763
"Metamorphosing individuals, oxidized"
SRR039758
"Early planula, untreated"
SRR039726
"Blastula, untreated"
SRR039731
"Adult females, untreated"
SRR039756
"Gastrula, untreated"
SRR039732
"Adult females, oxidized"
SRR039729
"Blastula, oxidized"
SRR039761
"Late planula, oxidized"
SRR039764
"Primary polyps, untreated"
SRR039765
"Primary polyps, oxidized"
SRR039759
"Early planula, oxidized"
SRR039760
"Late planula, untreated"
SRR039757
"Gastrula, oxidized"
........................................................................................TGACAGAAGATAGAAGCGCTGA.......................................................... 22 0 1 286.00 286 158 114 4 2 0 1 2 1 1 1 1 0 1 0 0 0
............................................................AGCGTTTCAATTTTCCGTCAGT...................................................................................... 22 1 1 23.00 23 18 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGCT............................................................ 20 0 1 15.00 15 9 5 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGCTG........................................................... 21 0 1 12.00 12 7 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGCTGAT......................................................... 23 1 1 7.00 7 2 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GACAGAAGATAGAAGCGCTGA.......................................................... 21 0 1 5.00 5 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGTTTCAAGTTTCCGTCAGT...................................................................................... 22 0 1 5.00 5 2 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGTTGA.......................................................... 22 1 1 5.00 5 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGTTTCAATTTTCCGTCAG....................................................................................... 21 1 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGC............................................................. 19 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCG.............................................................. 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGCTGG.......................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGCGGA.......................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGGTAGAAGCGCTGA.......................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGAAAGAAGCGCTG........................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGTTTCAATTTTCCGTCA........................................................................................ 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................ACAGAAGATAGAAGCGCTGA.......................................................... 20 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGGAGATAGAAGCGCTGA.......................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCACTGA.......................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGTGCTGA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCACAGAAGATACAAGCGCT............................................................ 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGCAGA.......................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCTCAGAAGATAGAAGCGCTCA.......................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTACAGAAGATAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGTTTCAATTTTCCGTCAGTGCT................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAGGATAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGCTGATT........................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGGCAGGAGATAGAAGCGCTGA.......................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TAACAGAAGGTAGAAGCGCTGA.......................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGTTTCAAGTTTCCGTCAG....................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACATAAGATAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGCTGATA........................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TAACAGAAGATAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AGACAGAAGATAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAGGACAGAAGCGCTGA.......................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GACAGAAGATAGAAGCGCTG........................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CTGACAGAAGATAGAAGCGCTGA.......................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCACAGAAGATAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAATCGCTGAG......................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGATAGAAGATAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATTGAAGCGCTGA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGCTGATTT....................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGTTTCAATTTTCCGTCAGA...................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................TGACAGAAGATAGATGCGCTGA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGATGATAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CGTTTCAATTTTCCGTCAGT...................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGAGAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGATGCGCTGT.......................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TAACAGAAGATAGAAGCGCTGATT........................................................ 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGTTTCAAGGTTCCGTCAGTT..................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGTAGCGCTGA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGACTGCGTAATAGAACCAGA..................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGCGATGA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAAAGAAGATAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAGAGCTGA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAGGATAGAAGCGCT............................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................GCGTTTCAATTTTCCGTCAGT...................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCCAGAAGATAGAAGCGCTGA.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AGACAGAAGATAGCAGCGCTGA.......................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGTTTCAATTTTCCGTCAGTCATGGC................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATACAAGCGCTGA.......................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGAAG................................................................ 16 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGACAGATGCTCTGA.......................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACTGAACATAGAAGCGCTGA.......................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGATAGGAGCGCTGA.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGATGATAGATGCTCTGA.......................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACCGAAGATAGAAGCGCTGA.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGTTAGAAGCGAGGA.......................................................... 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CACATGATGAGCATGAGTGGATGGT.................. 25 0 18 0.22 4 0 0 0 0 1 0 0 1 0 0 0 0 0 1 1 0
.............................................................................................................................CACATGATGAGCATGAGTGGATGGTGGC............... 28 0 17 0.18 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CACATGATGAGCATGAGTGGATGG................... 24 0 19 0.16 3 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1
........................................................................................TGACAGAGGATAGAAGGGGTGA.......................................................... 22 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACAGAAGAATGAAGCTCTG........................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AGCGTTTCAATTTTCCGTCATT...................................................................................... 22 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGTCACATGATGGGCATGAGTGGATGGT.................. 28 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................CACATGATGAGCATGAGTGGATGGTGG................ 27 0 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................TCACATGATGAGCATGAGTGGATGGTGG................ 28 0 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................CACATGATGAGCATGAGTGGATGGTGGCA.............. 29 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................ATGATGAGCATGAGTGGATGGTGGCAGA............ 28 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................ATGATGAGCATGAGTGGATGGTGGC............... 25 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGATGAGCATGAGTGGATGGTGGGAG............. 26 1 18 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................ATGATGAGCATGAGTGGATGGTGGCAG............. 27 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CACATGATGAGCATGAGTGGATGGG.................. 25 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................ATGATGAGCATGAGTGGATGGT.................. 22 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CACATGATGAGCATGAGTGGA...................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ACATGATGAGAATGAGTGGATG.................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CACATGATGAGCATGAGTGGAT..................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGAACCGCTGACATGTG.................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CACATGATGAGCATGAGTGGATG.................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................ATGATGAGCATGAGTGGATGG................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGCTGCAGTGCAGTTCCGAGTAGACTACCTAATGACGCATTATCTTGGTCTGGCGTACAGTCGCAAAGTTCAAAGGCAGTCAGTACCGACTGTCTTCTATCTTCGCGACTGTACACCAGACTACAGTGTACTACTCGTACTCACCTACCACCGTCTCTATAGACTCGT
*******************************************..(((((((((((((((((((((...((((.((((((....)))))).))))...)))))))))))))))))))))....*********************************************
Read size # Mismatch Hit Count Total Norm Total SRR039732
"Adult females, oxidized"
SRR039755
"Adult males, oxidized"
....GCAGTGCAGTTCCGAGTAGACTAC............................................................................................................................................ 24 0 1 1.00 1 1 0
....................................................GTGTACAGTCGCCAAGT................................................................................................... 17 2 20 0.05 1 0 1

Generated: 08/21/2014 at 09:34 AM