ID:

nve-mir-9421

Coordinate:

scaffold_80:892616-892683 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.2 -37.2 -37.1

Sense Strand Reads

CTTAGTGCTTGGGCAAATGGAACCTTTGTCGTCGTCAGTTAAACGACTTGTATTGGTTACCATAAATGGTAGATACGAAATTCGTTAAATGATTGCGTATCTGCCATTAATGCTAACCAACACAGGTTCCAACAAATGGTAACCGTCCAGGTTCATCTGATGGATGAC
*********************************************((((((.(((((((.(((.(((((((((((((....((((...))))...))))))))))))).))).))))))).))))))..***************************************
Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"
SRR039755
"Adult males, oxidized"
SRR039729
"Blastula, oxidized"
SRR039726
"Blastula, untreated"
SRR039763
"Metamorphosing individuals, oxidized"
SRR039762
"Metamorphosing individuals, untreated"
SRR039731
"Adult females, untreated"
SRR039758
"Early planula, untreated"
SRR039760
"Late planula, untreated"
SRR039764
"Primary polyps, untreated"
............................................................................................TTGCGTATCTGCCATTAATGCT...................................................... 22 0 1 293.00 293 184 94 5 5 2 2 1 0 0 0
.............................................................................................TGCGTATCTGCCATTAATGCT...................................................... 21 0 1 26.00 26 16 10 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCATTAATGC....................................................... 21 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCATTAATTCT...................................................... 22 1 1 3.00 3 1 1 0 0 0 0 0 0 1 0
............................................................................................TTGCGTATCTGCCATTAATG........................................................ 20 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTTCCATTAATTCT...................................................... 22 2 1 2.00 2 1 0 0 0 0 0 0 0 0 1
............................................................................................TTGCCTATCTGCCATTAATGCT...................................................... 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0
............................................................................................TTGCGGATCTGCCATTAATGCT...................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCGGCCATTAATGCT...................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTTCCATTAATGCT...................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0
............................................................................................TTGCGTGTCTGCCATTAATGCT...................................................... 22 1 1 2.00 2 0 1 0 0 1 0 0 0 0 0
............................................................................................TTGCGTATCTGCCCTTAATGCT...................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................TGCGTATCTGCCATTAATGCTA..................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................CATAAATGGTAGATACGAA......................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TGGCGTATCTGCCATTAATGCT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................CCATAAATGGTAGATACGAAATT...................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................ATGCGTATCCGCCATTAAAGCT...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCATTAATGCTC..................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCGACCATTAATGCT...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCTTTAATGCT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCATCAATGCT...................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATATGCCATTAATGAT...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCATTAATACT...................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCATTAATGCTA..................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTTCGTATCTGCCATTAATGCT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGTGTATCTGCCATTAATGCT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCTTATCTTCCATTAATGCT...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATATGCCATTAATGCT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGGATCTGCCATTAATGC....................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................CATAAATGGTAGATACGAAATT...................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGGATCTGCCATTAATTCT...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCAGTAATGCT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TGGCGTATCTGCAATTAATGCT...................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0
............................................................CATAAATGGTAGATACGAAAT....................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCCTTAATGCG...................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCATTAATGCC...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TGCGTATCTGCCATTAATGCTT..................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TGCGTATCTGCCATTAATTCT...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TGCGTATCGGCCATTAAGGCT...................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TTGCGCATCTGCCATTAATGCT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TGCGTATCTGCCATTAATGAT...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCATTAATGTT...................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TTGCGAATCTGCCATGAATGCT...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATTTGCCATTAATGCT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCATGAATGCT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCCGCCATTAATGCT...................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCATTTTTGCT...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGCGTATCTGCCGTTAATGCT...................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TTTCGTATCTACCATTAATGCT...................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TGCGTGGCTGCCACTAATGCT...................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTTCGTATCTTCCATTAATTCT...................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTGAGTATCTGACCTTAATGCT...................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GAATCACGAACCCGTTTACCTTGGAAACAGCAGCAGTCAATTTGCTGAACATAACCAATGGTATTTACCATCTATGCTTTAAGCAATTTACTAACGCATAGACGGTAATTACGATTGGTTGTGTCCAAGGTTGTTTACCATTGGCAGGTCCAAGTAGACTACCTACTG
***************************************((((((.(((((((.(((.(((((((((((((....((((...))))...))))))))))))).))).))))))).))))))..*********************************************
Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"
SRR039731
"Adult females, untreated"
SRR039764
"Primary polyps, untreated"
SRR039755
"Adult males, oxidized"
SRR039762
"Metamorphosing individuals, untreated"
SRR039726
"Blastula, untreated"
SRR039732
"Adult females, oxidized"
SRR039758
"Early planula, untreated"
SRR039727
"Unfertilized eggs, untreated"
SRR039756
"Gastrula, untreated"
SRR039763
"Metamorphosing individuals, oxidized"
SRR039765
"Primary polyps, oxidized"
..........................................................TGGTATTTACCATCTATGCTT......................................................................................... 21 0 1 27.00 27 9 11 3 1 2 0 0 0 0 0 1 0
........................................................AATGGTATTTACCATCTATGCTT......................................................................................... 23 0 1 12.00 12 6 6 0 0 0 0 0 0 0 0 0 0
.........................................................ATGGTATTTACCATCTATGCTT......................................................................................... 22 0 1 12.00 12 8 4 0 0 0 0 0 0 0 0 0 0
.........................................................TTGGTATTTACCATCTATGCTT......................................................................................... 22 1 1 12.00 12 7 3 0 0 0 0 1 0 0 0 0 1
........................................................TATGGTATTTACCATCTATGCTT......................................................................................... 23 1 1 8.00 8 3 5 0 0 0 0 0 0 0 0 0 0
..........................................................TGGTATTTACCGTCTATGCTT......................................................................................... 21 1 1 8.00 8 3 2 1 2 0 0 0 0 0 0 0 0
.......................................................TATTGGTATTTACCATCTATGCTT......................................................................................... 24 2 1 6.00 6 1 4 0 0 0 0 0 0 1 0 0 0
........................................................AATGGTATTTACCGTCTATGCTT......................................................................................... 23 1 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0 0
..........................................................TGGTATTTACCATCTATGCTTT........................................................................................ 22 0 1 5.00 5 0 4 0 0 0 0 0 1 0 0 0 0
..........................................................AGGTATTTACCATCTATGCTT......................................................................................... 21 1 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................TGTTATTTACCATCTATGCTT......................................................................................... 21 1 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
........................................................TTTGGTATTTACCATCTATGCTT......................................................................................... 23 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
........................................................AATGGTATTTACCATCTATGCT.......................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATGGTATTTACCATCTATGCTTT........................................................................................ 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................ATATATGGTATTTACCATCTATGCTTT........................................................................................ 27 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................TGGTATTTACCATCTAAGCTT......................................................................................... 21 1 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
........................................................ATTGGTATTTACCATCTATGCTT......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................AATGGTATTTACCATCTGTGCTT......................................................................................... 23 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0
........................................................AATTGTATTTACCATCTATGCTT......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................AGTATTTACCATCTATGCTT......................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................AATGGTATTTACCGTCTGTGCTT......................................................................................... 23 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................TAATGGTATTTACCATCTATGCTT......................................................................................... 24 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................TTGGTATTTACCATCTATGCTTT........................................................................................ 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................TGGTATTTACCATCTAGGCTT......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................ACTAACGCATAGACGGTAATTA......................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TATGGTATTTACCGTCTATGCTT......................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TAGGTATTTACCATCTATGCTT......................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................AATGGTATTTACAATCTATGCTT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................GGTATTTACCATATATGCTT......................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................TATTGGTATTTACCATCTATGCTTT........................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................AAGGGTATTTACCATCTAGGCTT......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATGCTATGTACCATCTATGCTT......................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................GGTATTTACCATCTATGCTT......................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................ATTGGTATTTACCATCTGTGCTT......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TAAGGTATTTACCATCTATGCTT......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGCTATTTACCGTCTATGCTT......................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................ATTGGTATTTACCATCTATGCT.......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................TAGTATTTACCATCTATGCT.......................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................ATTATTGGTATTTACCATCTATGCTTT........................................................................................ 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................AATGGTATTTACCATCTATTCTT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................ATTTAATGGTATTTACCATCTATGCTT......................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATGTTATTTACCATCTATGCTT......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATTGTATTTACCATCTATGCTT......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TTAATGGTATTTACCATCTATGCTT......................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAACGCATAGACGGTAATTAC........................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTGGTATTTACCGTCTATGCTT......................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................AAATGGTATTTACCATCTATGCTT......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TTGTATTTACCGTCTATGCTT......................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTATGGTATTTACCATCTATGCTT......................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................AACGCATAGACGGTAATTACG....................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGGTATTTAACATCTAGGCTT......................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................AGGTATTTACCACCTATGCTT......................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................AATGGTATTGACCAGCTATGCTT......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................AATATTGGTATTTACCATCTATGCTTT........................................................................................ 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATGGGACGTACCATCTATGCT.......................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................TATAAATGGTATTTACCATCTATGCTT......................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................AAATTGTATTTACCATCTATGCT.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TTAGGTATTTACCATCTATGCTT......................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGGTATTTACCCTCTATGGTT......................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................TGGTATTTACCATCTGTGCTTT........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGGTGTTTACCGTCTATGCTT......................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................GTATTTACCATCTATGCTTT........................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................AAGGTATTTACCGTCTATGCTT......................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AACGCATCGACGGTAATTACGA...................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................TGGTATTTACCGTCTATGCTTT........................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................TCGTAATTACCATCTATGCTTT........................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTGGTATTTACCATCTAAGCGT......................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TATGGTATTTACCATCTAT............................................................................................. 19 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................ATTTTTATTTACCATCTATGCTT......................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGTTATTTACCGTCTATGCT.......................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TATTATTTACCATCTATGCT.......................................................................................... 20 2 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0 0

Generated: 08/21/2014 at 10:40 AM