ID:nve-mir-9419 |
Coordinate:scaffold_22:1211097-1211164 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -23.6 |
 |
|
ATGGCGTAGGCGAAGAGACAATATGTCATTTGAAAGAAATAAAGTGAGACCGAACTTGACATTCAAGCAACCTCGAAATCATGAAATGTTCTTGAAGATGCTTGAATTTTAAGTTTTGTCGCTTCTTGAAGAAAAAGAGCTACCTTACAAAAGAAACAAAAACACATT
*******************************************....(((.((((((((.(((((((((...((((...(((...)))...))))...))))))))).)))))))).))).....******************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR039754 "Adult males, untreated" |
SRR039755 "Adult males, oxidized" |
SRR039726 "Blastula, untreated" |
SRR039762 "Metamorphosing individuals, untreated" |
SRR039763 "Metamorphosing individuals, oxidized" |
SRR039729 "Blastula, oxidized" |
SRR039760 "Late planula, untreated" |
SRR039731 "Adult females, untreated" |
SRR039732 "Adult females, oxidized" |
SRR039758 "Early planula, untreated" |
SRR039759 "Early planula, oxidized" |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................TTCTTGAAGATGCTTGAATTTT.......................................................... | 22 | 0 | 1 | 304.00 | 304 | 218 | 76 | 4 | 0 | 2 | 2 | 0 | 1 | 1 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATTTTT......................................................... | 23 | 1 | 1 | 15.00 | 15 | 12 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATTT........................................................... | 21 | 0 | 1 | 11.00 | 11 | 10 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTTTTGAAGATGCTTGAATTTT.......................................................... | 22 | 1 | 1 | 8.00 | 8 | 0 | 0 | 0 | 3 | 2 | 0 | 1 | 0 | 0 | 1 | 1 |
| ........................................................................................TTCTTGAAGATGCTTGAATTTTA......................................................... | 23 | 0 | 1 | 6.00 | 6 | 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATTTTAT........................................................ | 24 | 1 | 1 | 5.00 | 5 | 3 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATT............................................................ | 20 | 0 | 1 | 4.00 | 4 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAAT............................................................. | 19 | 0 | 1 | 4.00 | 4 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................ACATTCAAGCAACCTCGAAATCA....................................................................................... | 23 | 0 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGAGGCTTGAATTTT.......................................................... | 22 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCCTGAATTTT.......................................................... | 22 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAA.............................................................. | 18 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGGTGCTTGAATTTT.......................................................... | 22 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGATTTTT.......................................................... | 22 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATTTA.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTCGAATTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATTCT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGGATTT........................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATTTTTT........................................................ | 24 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................CTTCTTGAAGATGCTTGAATTTTAT........................................................ | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAAACGCTTGAATTTT.......................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTGGAAGATGCTTGAATTTA.......................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAGTTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................ACATTCAAGTAACCTCGAAATCA....................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAGGATGCTTGAATTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAACATGCTTGAATTT........................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGTAGTTGCTTGAATTTT.......................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATTCTTGAATTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATTTTTTT....................................................... | 25 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................CATTCAAGCAACCTCGAAATCT....................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTGGAAT............................................................. | 19 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGACTTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................TCTTGAAGATGCTTGAAATTT.......................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................CTTGAAGATGCTTGAATTTTAT........................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTTTTGAAGATGCTTGAATTTTT......................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGAAGCTTGAAGTTT.......................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTGGAATTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGGAGATGCTTGAATTTTT......................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTATTGAAGATGATTGAATTTT.......................................................... | 22 | 2 | 2 | 1.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGATTGATTTTT.......................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTTTTGAAGATGCTTGAATTT........................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGAGGCTTGAATTT........................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TACTTGAAGATGCTTGAATTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATTTG.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGAGGTTTGAATTTT.......................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTATTGAAGATGCTTGAATTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................TTTTGAAGATGCTTGAATTTTT......................................................... | 22 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATCCTTGAATTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAACTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTCAAGATGCTTGAATTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGATTGAATTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATGTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAAGATGCTTGAATTTTAA........................................................ | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTGGAAGATGCTTGAATTTT.......................................................... | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................CATTCAAGCAACCTCGCGATCA....................................................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................TCTTGAAGATGCTTGAATTTT.......................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TACTTGAAGATGGTTGAATTTT.......................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTCGAAGATGCTTGAATTC........................................................... | 21 | 2 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................AGATGCTTGAATTTT.......................................................... | 15 | 0 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTTGAATATGCTTGAATTTT.......................................................... | 22 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TGCTTGAAGATGCTTGAATTTT.......................................................... | 22 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTCGAAGATGCGTGAAATTT.......................................................... | 22 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTTGTGAAGATGCTTGAATTTT.......................................................... | 22 | 2 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TGCGTGAAGATGCTTGAATGTT.......................................................... | 22 | 3 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TGCGTGAAGATGCTGGAATTTT.......................................................... | 22 | 3 | 10 | 0.10 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTATTGAAGATGATTGAATGTT.......................................................... | 22 | 3 | 14 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................TTCTAGAAGACGCTGGAATT............................................................ | 20 | 3 | 19 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
|
TACCGCATCCGCTTCTCTGTTATACAGTAAACTTTCTTTATTTCACTCTGGCTTGAACTGTAAGTTCGTTGGAGCTTTAGTACTTTACAAGAACTTCTACGAACTTAAAATTCAAAACAGCGAAGAACTTCTTTTTCTCGATGGAATGTTTTCTTTGTTTTTGTGTAA
*******************************************....(((.((((((((.(((((((((...((((...(((...)))...))))...))))))))).)))))))).))).....******************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR039727 "Unfertilized eggs, untreated" |
SRR039728 "Unfertilized eggs, oxidized" |
|---|---|---|---|---|---|---|---|
| ............................................................TAAGTTCGTTGGAGGGT........................................................................................... | 17 | 2 | 20 | 0.10 | 2 | 1 | 1 |
Generated: 08/21/2014 at 09:34 AM