ID:

nve-mir-9416-1

 Coordinate:

scaffold_241:141839-141906 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.8 -41.7 -41.4
mature
  1. scaffold_241:141877-141898 +
  2. scaffold_241:165950-165971 +
  3. scaffold_241:177575-177596 +
star

Sense Strand Reads

GTGATTCAAAGCCTTTAGACACGTCTTTCTCGTCAAAGGGGCTACTCAAACCTTGTACACGACATCTCGTAGTGCTCACGCATCATGCAAGAACACTACAAATTGTCGTGTACAAGGTTTGCATCATGCAAGAACACTACGAGATGTCGTGTATAATTTTTGACGACG
***********************************.....((....((((((((((((((((((....((((((.((..(((...)))..)).))))))....))))))))))))))))))......))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"
........................................................................................AAGAACACTACAAATTGTCGTG.......................................................... 22 0 3 121.67 365 251 101 11 1 0 1 0 0
........................................................................................AAGAACACTACAAATTGTCGTGT......................................................... 23 0 3 44.33 133 74 56 1 1 1 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTT.......................................................... 22 1 3 3.00 9 6 3 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCTTG.......................................................... 22 1 3 2.33 7 5 2 0 0 0 0 0 0
.........................................................................................AGAACACTACAAATTGTCGTG.......................................................... 21 0 3 2.00 6 2 4 0 0 0 0 0 0
.........................................................................................AGAACACTACAAATTGTCGTGT......................................................... 22 0 3 2.00 6 4 1 0 0 1 0 0 0
........................................................................................AAGAACACTACGAATTGTCGTG.......................................................... 22 1 3 1.67 5 5 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGT........................................................... 21 0 3 1.33 4 2 2 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTGC......................................................... 23 1 3 1.33 4 3 1 0 0 0 0 0 0
........................................................................................AAGAACACTATAAATTGTCGTG.......................................................... 22 1 3 1.00 3 3 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTA.......................................................... 22 1 3 1.00 3 1 2 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTTT......................................................... 23 1 3 1.00 3 1 2 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCG............................................................ 20 0 3 0.67 2 2 0 0 0 0 0 0 0
........................................................................................AAGAACAATACAAATTGTCGTG.......................................................... 22 1 3 0.67 2 1 1 0 0 0 0 0 0
........................................................................................AAGAACACTGCAAATTGTCGTG.......................................................... 22 1 3 0.67 2 0 2 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGCG.......................................................... 22 1 3 0.67 2 0 2 0 0 0 0 0 0
........................................................................................AAGAACACGACAAATGGTCGTG.......................................................... 22 2 3 0.67 2 1 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTGTAT....................................................... 25 1 3 0.67 2 1 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTTTCGTG.......................................................... 22 1 3 0.67 2 2 0 0 0 0 0 0 0
........................................................................................AAGAACACCACAAATTGTCGTG.......................................................... 22 1 3 0.67 2 1 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTGTA........................................................ 24 0 3 0.67 2 1 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGCCGTGT......................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAAATGTCGTC.......................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................ATGAACACTACAAATTGTCGTG.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................................................CAAGAACACTACAAATTGTCGTG.......................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0 0
.........................................................................................AGAACACTACAAATTGTCGTGTA........................................................ 23 0 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACATTACAAATTGTCGTG.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTGG......................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGGG.......................................................... 22 1 3 0.33 1 0 0 0 1 0 0 0 0
........................................................................................AAGAACACCACAAATTGTCGGG.......................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGCT.......................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0 0
............................................................................................ACACTACAAATGGTCGTGTAT....................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAATACTACAAATTGTCGTG.......................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTATCGTG.......................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTGTATT...................................................... 26 2 3 0.33 1 0 1 0 0 0 0 0 0
.........................................................................................AGAACACGACAAATTGTCGTG.......................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................ACGAACACTACAAATTGTCTTGT......................................................... 23 2 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCCTGT......................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTGA......................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTAAAAATTGTCGTG.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACGACAAATTGTCGTGT......................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACGCTACAAATTGTCGTG.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGGCGTGT......................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTTGTG.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTCCAAATTGTCGT........................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAACTTGTCGTGT......................................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGCCGTG.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAAATGTCGT........................................................... 21 1 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTGTT........................................................ 24 1 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................GAGAACACTACAAATTGTCGTG.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTTCAAATTGACGTG.......................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGGGG......................................................... 23 2 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAACTGTCGTA.......................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAGCACTACAAATTGTCGTG.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACATATTGTCGTC.......................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACGACAAATTGTCGTG.......................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTCGTAT......................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATGGTCGTG.......................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACATTACAAATTGTCGTGA......................................................... 23 2 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTTTCATGT......................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................TAGAACACTACAAATTGTCGTG.......................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTTTCTTGT......................................................... 23 2 4 0.25 1 1 0 0 0 0 0 0 0
.................................................................................................................................AAGAACACTACGAGATGTCGTGT................ 23 0 4 0.25 1 1 0 0 0 0 0 0 0
........................................................................................AACAACACTACAAAGTGTCGTGA......................................................... 23 3 4 0.25 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACACGACAAATAGTCGTG.......................................................... 22 2 4 0.25 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACCACAAATTGCCGCG.......................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0
........................................................................................AAGAAAACTACAAATGGGCGTG.......................................................... 22 3 4 0.25 1 0 1 0 0 0 0 0 0
........................................................................................AAGAACACTACAAATTGTGGTT.......................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0 0
........................................................................................AAGAACAATACAAATTGTCTTG.......................................................... 22 2 6 0.17 1 1 0 0 0 0 0 0 0
........................................................................................AAGGATACTACAAATTTTCGTG.......................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0
................AGACACGTCTCTCTCTTCA..................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 1 0
..............................................................................................ACTACAAAATGTCGTGTAT....................................................... 19 2 9 0.11 1 1 0 0 0 0 0 0 0
.......................................................................................................................................ACTACAAAATGTCGTGTAT.............. 19 2 9 0.11 1 1 0 0 0 0 0 0 0
........................................................................................AAGAAAACTACAAATGGTCGA........................................................... 21 3 17 0.06 1 1 0 0 0 0 0 0 0
........................................................................................AAAAACACTACAAATTTTCTTG.......................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................TAAGGGTTGCATCATGC....................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1
........................................................................................AAGAACACTACAAATTCGTG............................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

CACTAAGTTTCGGAAATCTGTGCAGAAAGAGCAGTTTCCCCGATGAGTTTGGAACATGTGCTGTAGAGCATCACGAGTGCGTAGTACGTTCTTGTGATGTTTAACAGCACATGTTCCAAACGTAGTACGTTCTTGTGATGCTCTACAGCACATATTAAAAACTGCTGC
***********************************.....((....((((((((((((((((((....((((((.((..(((...)))..)).))))))....))))))))))))))))))......))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039756
"Gastrula, untreated"
............................................................................GTGCATAGTACGTTCTTGTGAACTTT.................................................................. 26 3 3 0.33 1 1

Generated: 08/21/2014 at 09:47 AM