ID:

nve-mir-9415-2

 Coordinate:

scaffold_1:2331684-2331751 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.4 -24.3 -24.1 -19.1
mature
  1. scaffold_8897:1293-1315 +
  2. scaffold_9953:2511-2533 +
  3. scaffold_6664:6205-6227 -
  4. scaffold_6614:6071-6093 -
  5. scaffold_6083:6471-6493 +
  6. scaffold_2994:1429-1451 -
  7. scaffold_2994:3116-3138 -
  8. scaffold_2994:9733-9755 -
  9. scaffold_2145:14357-14379 -
  10. scaffold_1318:34658-34680 +
  11. scaffold_927:1131-1153 -
  12. scaffold_729:13711-13733 -
  13. scaffold_729:19267-19289 -
  14. scaffold_729:20732-20754 -
  15. scaffold_262:119106-119128 -
  16. scaffold_220:376094-376116 +
  17. scaffold_48:1095590-1095612 -
  18. scaffold_1:2331722-2331744 -
star

Sense Strand Reads

TTTAGCAAATTTTTACCAATCGGGCCCTAAAAAGCATCGGAGTTGCCAAATAAACTCATACTTACCTGACGCGGGAGGTTTATCGTGACCAACGCGGTCCTCTTAGGGTGAGGCCATCTTATAAATCAAGAGAACAAAAAACACCGAAATCGAGCTAAGGGGGTAAGC
***********************************....(((((........)))))...(((((((......(((((...((((((.....)))))))))))..)))))))....((((.......))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039758
"Early planula, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039760
"Late planula, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039754
"Adult males, untreated"		 SRR039731
"Adult females, untreated"		 SRR039726
"Blastula, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039759
"Early planula, oxidized"
.........................................................ATACTTACCTGACGCGGGAGGTT........................................................................................ 23 0 18 38.89 700 390 146 131 26 0 4 3 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGGT......................................................................................... 22 0 18 12.61 227 96 80 46 4 0 0 1 0 0 0 0
.........................................................ATACTTACCTGACGCGGGA............................................................................................ 19 0 18 3.22 58 36 7 8 4 1 2 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAG........................................................................................... 20 0 18 2.78 50 27 9 8 3 1 1 1 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGG.......................................................................................... 21 0 18 1.44 26 6 13 5 2 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGTGAGGTT........................................................................................ 23 1 18 0.67 12 8 0 4 0 0 0 0 0 0 0 0
..................................................TAAACTCATACTTACCTGACGCGGGAGGTT........................................................................................ 30 0 16 0.50 8 0 0 0 0 1 0 0 4 1 1 1
.........................................................ATACTTACCTGACGCGGGAGGGT........................................................................................ 23 1 18 0.50 9 7 2 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGG............................................................................................. 18 0 18 0.39 7 6 0 0 0 1 0 0 0 0 0 0
.........................................................ATACTTACCTGACTCGGGAGGTT........................................................................................ 23 1 18 0.33 6 5 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGGCT........................................................................................ 23 1 18 0.33 6 4 1 0 1 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGTGGGAGGTT........................................................................................ 23 1 18 0.28 5 3 1 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACGCGGGAGGTT........................................................................................ 23 1 18 0.28 5 5 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACTTGACGCGGGAGGTT........................................................................................ 23 1 18 0.28 5 3 0 2 0 0 0 0 0 0 0 0
..........................................................TACTTACCTGACGCGGGAGGTT........................................................................................ 22 0 18 0.28 5 2 3 0 0 0 0 0 0 0 0 0
.........................................................ATACTTATCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.22 4 1 2 0 1 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGCGGTT........................................................................................ 23 1 18 0.22 4 2 1 0 1 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGTTT........................................................................................ 23 1 18 0.22 4 2 0 2 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACACGGGAGGTT........................................................................................ 23 1 18 0.22 4 2 0 2 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGATGTT........................................................................................ 23 1 18 0.22 4 1 1 2 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGATGCGGGAGGT......................................................................................... 22 1 18 0.22 4 4 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGCCGCGGGAGGTT........................................................................................ 23 1 18 0.22 4 3 0 0 1 0 0 0 0 0 0 0
..........................................................TACTTACCTGACGCGGGAGGT......................................................................................... 21 0 18 0.22 4 0 0 3 1 0 0 0 0 0 0 0
..........................................................TACTTACCTGACGCGGGAG........................................................................................... 19 0 18 0.22 4 2 1 0 1 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGGC......................................................................................... 22 1 18 0.17 3 2 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGTGAGGT......................................................................................... 22 1 18 0.17 3 1 1 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGATGCGGGAGGTT........................................................................................ 23 1 18 0.17 3 2 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGGTTTA...................................................................................... 25 0 18 0.17 3 0 1 2 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGTAGGT......................................................................................... 22 1 18 0.17 3 2 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACATGACGCGGGAGGTT........................................................................................ 23 1 18 0.17 3 0 1 2 0 0 0 0 0 0 0 0
.............................................................................................................................TCGAGAGAGCAAAAAACACC....................... 20 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
..................................................TAAACTCATACTTACCTGACGCGGGAGGT......................................................................................... 29 0 16 0.13 2 0 0 0 0 0 0 0 0 2 0 0
.........................................................ATACTTACCTGACGTGGGAGGT......................................................................................... 22 1 18 0.11 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGAGGGAGGTT........................................................................................ 23 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................ATATTTACCTGACGCGGGA............................................................................................ 19 1 18 0.11 2 1 0 1 0 0 0 0 0 0 0 0
.........................................................ATACGTACCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.11 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGCCGCGGGAGGT......................................................................................... 22 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTGACCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGGAT........................................................................................ 23 1 18 0.11 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGTGGGA............................................................................................ 19 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................TTACTTACCTGACGCGGGA............................................................................................ 19 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACTCGGGAGGT......................................................................................... 22 1 18 0.11 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGTAGGTT........................................................................................ 23 1 18 0.11 2 1 0 1 0 0 0 0 0 0 0 0
...........................................................ACTTACCTGACGCGGGAG........................................................................................... 18 0 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGGTTT....................................................................................... 24 0 18 0.11 2 0 1 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCTGGAGGTT........................................................................................ 23 1 18 0.11 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGATGT......................................................................................... 22 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACTTGACGCGGGAGGT......................................................................................... 22 1 18 0.11 2 1 0 1 0 0 0 0 0 0 0 0
.........................................................ATATTTACCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.11 2 1 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGTGATGTT........................................................................................ 23 2 18 0.11 2 0 1 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGTGGT......................................................................................... 22 1 18 0.11 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCAGGAGGTT........................................................................................ 23 1 18 0.11 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCTGGAGGT......................................................................................... 22 1 18 0.11 2 1 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGGG......................................................................................... 22 1 18 0.11 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGCGGT......................................................................................... 22 1 18 0.11 2 0 1 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGCG........................................................................................... 20 1 18 0.11 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGAAGGTT........................................................................................ 23 1 18 0.11 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................ATACTTCCCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGAGAGGTT........................................................................................ 23 1 18 0.11 2 1 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTGACCTGACGCGGGAGGGT........................................................................................ 23 2 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................ATACCTACCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................AGACTTACCTGACGCGGGGGGTT........................................................................................ 23 2 19 0.11 2 1 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGGCGCGGGAGGTT........................................................................................ 23 1 19 0.11 2 1 0 1 0 0 0 0 0 0 0 0
............................................................CTTACCTGACGCGGGAGGTT........................................................................................ 20 0 19 0.11 2 0 0 1 1 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGGGGTT........................................................................................ 23 1 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0
...................................................AAACTCATACTTACCTGACGCGGGAGGTT........................................................................................ 29 0 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0
........................................................CATACTTACCTGACGCGGGAGGTT........................................................................................ 24 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTATCTGATGCGGGAGGTT........................................................................................ 23 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCCGACGCGGGAAGT......................................................................................... 22 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................TACTTACCTGACGCGGGAGGG......................................................................................... 21 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACGCGGGAGGAT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................CTACTTACCTGACGCGGGACG.......................................................................................... 21 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................CTACTTCCCTGACGCGGGAGGTT........................................................................................ 23 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGTTAGGTT........................................................................................ 23 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCTGGAGG.......................................................................................... 21 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ACACTTACCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................AGAATTACCTGACGCGGGAGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCAGACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACGTACCTGACGCGGGAA........................................................................................... 20 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................AGACTGACCTGACGCGGGAGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGCGAGGTT........................................................................................ 23 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTCCCTGACGCGGGCGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCATACGCGGGAGGTTAA...................................................................................... 25 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATAATTACCTGACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACGCGGGAGTTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGAGGGCGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTATTTGACGCGGGAGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACATACCTGACGGGGGAGGTT........................................................................................ 23 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACGCTTGAGGTT........................................................................................ 23 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACGCGGGA............................................................................................ 19 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTACTTATCTGACGCGGGAGGCT........................................................................................ 23 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTCACGCGGGACGGT........................................................................................ 23 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACTCGGG............................................................................................. 18 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................ATACGTACCTGACGCCGGAGGTT........................................................................................ 23 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACCCGGGAGGTT........................................................................................ 23 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGGTG........................................................................................ 23 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTACTTACCTGTCGCGGGAGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................AGACTTACCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTCACCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATATTTACCTGACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................CTACTTACCTGCCGAGGGAGGTT........................................................................................ 23 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACAGGACGAGGGAGGTT........................................................................................ 23 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................ATACATACCTGAAGAGGGAGGTT........................................................................................ 23 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACTTGACGCGGGA............................................................................................ 19 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACTCGTGAGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................TACTTACCTGACGCGGGAGGGT........................................................................................ 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACGTACCTGACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGCGAG........................................................................................... 20 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................AGACTTACCTGACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGTG........................................................................................... 20 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAT........................................................................................... 20 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGCA............................................................................................ 19 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGC............................................................................................ 19 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................AAACTTACCTGCCGCGTGAGGTT........................................................................................ 23 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTAACTGACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................ATATACTTACCTGACGCTGGAGGTT........................................................................................ 25 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACTCGGGAGGTT........................................................................................ 23 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACATGACGCGGCAG........................................................................................... 20 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGAAGCGGGAGGT......................................................................................... 22 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTGCCTGACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGAAGG.......................................................................................... 21 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGAAG........................................................................................... 20 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTCCCTGACGCGGGATGT......................................................................................... 22 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................ATTTACCTGACGCGGGAGGTT........................................................................................ 21 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTGACCTGACGCTGGAGGAT........................................................................................ 23 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGCACGTT........................................................................................ 23 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATAATTACCTGACGAGGGAGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACATGAAGCGGGAGGTT........................................................................................ 23 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTGACATGACGCGGGAGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTATCTGACGCGGG............................................................................................. 18 1 18 0.06 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................ATACTGACCTGACGCGGGAGG.......................................................................................... 21 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGGTC........................................................................................ 23 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACATGACGCGTGAGGTT........................................................................................ 23 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTATCTGACGCGGGAGG.......................................................................................... 21 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................TTACTTGCCTGCCGCGGGAGGTT........................................................................................ 23 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................AGACTTACCTGACGCGCGAGGTT........................................................................................ 23 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGCAGGTT........................................................................................ 23 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTGACCTGACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGTGGCAG........................................................................................... 20 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGTGAGG.......................................................................................... 21 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGAGAGC.......................................................................................... 21 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACCTACCTGACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGATG.......................................................................................... 21 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGCCGCGGGA............................................................................................ 19 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTAAATGACGAGGGAGGTT........................................................................................ 23 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTACTTACCTGAAGCGGGAGGT......................................................................................... 22 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTATCTGACGCGGGAG........................................................................................... 20 1 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................ATACTTATTTGACGCGGGAGGGT........................................................................................ 23 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACTCGGGAGTT......................................................................................... 22 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACGCGGGAG........................................................................................... 20 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................ATACTTACATGACGCGGGAGG.......................................................................................... 21 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................ATACTTACCAGACGCGGGAGGTT........................................................................................ 23 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................ATACTTACCTGATGCGGGAG........................................................................................... 20 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGAAGCGGGAGGTT........................................................................................ 23 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGCGG.......................................................................................... 21 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCTGGAGTTT........................................................................................ 23 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACGTACCTGACGAGGGAGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACGCGGTAGGT......................................................................................... 22 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTAGCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACTCTGGAGGTT........................................................................................ 23 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTATCTGACGCGGGAGGT......................................................................................... 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACTCGGGA............................................................................................ 19 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................AAACTTACCTGACGCGGGA............................................................................................ 19 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................AGACTTACCTGACGCGGGAG........................................................................................... 20 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................TACTTACCTGACGCGGGA............................................................................................ 18 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGAAGGT......................................................................................... 22 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACTCGGGAG........................................................................................... 20 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACGCGGGATGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGTATGAT........................................................................................ 23 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACTCGGGAGGT......................................................................................... 22 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCCGGAGG.......................................................................................... 21 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................TACTTACCTGACGCGGGCG........................................................................................... 19 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACCCGGGAGGT......................................................................................... 22 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTCCCTCACGCGGGCGGT......................................................................................... 22 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTACTTACCAGATGCGGGAGGTT........................................................................................ 23 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACATGACGCGGGA............................................................................................ 19 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATAAGTACCTGACGCGGGAGGT......................................................................................... 22 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTAACTGACGCGGGAGGTT........................................................................................ 23 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCGGACGCGGGAGGTT........................................................................................ 23 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGTGT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTCCCTTACGCGGGACGT......................................................................................... 22 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTTACGTGGGAGGT......................................................................................... 22 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGTGGGCGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGAGGGC........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATAGTTAGCTGACGCGGGAGGTT........................................................................................ 23 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATAATTACCTGACGCGGGAGGTT........................................................................................ 23 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACCTACCTGACGCTGGAGGTT........................................................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGGCGCGGGAGGAT........................................................................................ 23 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCGTACGCTGGAGGTT........................................................................................ 23 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACGTACCTGACGCGGGGGGGT........................................................................................ 23 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGTCGCGGGCGGTT........................................................................................ 23 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATCCTTACCTGACGCGGGAG........................................................................................... 20 1 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTAGCTGACGCGGGGGGT......................................................................................... 22 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................TGCTTACCTGATGCGGGAGGTT........................................................................................ 22 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATCCTTACCTGACGCGGGCGGTT........................................................................................ 23 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGCCGCGGGCGGTT........................................................................................ 23 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
............................................................CTTACCTGACGCGGGAGGTTT....................................................................................... 21 0 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................TTACCTGACGCGGGAGGTT........................................................................................ 19 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGTCGCGGGTGGTT........................................................................................ 23 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................CTTACCCGACGCGGGAGGTTTA...................................................................................... 22 1 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGAGGTT......................................................................................... 22 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................TACCTGACGCGGGAGGTT........................................................................................ 18 0 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGGGG.......................................................................................... 21 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTCCCTGCCGCGGGCGGTT........................................................................................ 23 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCGGACGCGGGGGG.......................................................................................... 21 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGGG........................................................................................... 20 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTCCCGCGGGTGGT......................................................................................... 22 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGAGGT.......................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACATGACGCCGTAG........................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................ATACTTACCTGACGCGGGTGGG......................................................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATACTTATTTGACGCGTGAG........................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................TTACCTGACGCGGGAGGTACT...................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................ATACTTACTTGATGCGGGTGG.......................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAATCGTTTAAAAATGGTTAGCCCGGGATTTTTCGTAGCCTCAACGGTTTATTTGAGTATGAATGGACTGCGCCCTCCAAATAGCACTGGTTGCGCCAGGAGAATCCCACTCCGGTAGAATATTTAGTTCTCTTGTTTTTTGTGGCTTTAGCTCGATTCCCCCATTCG
***********************************....(((((........)))))...(((((((......(((((...((((((.....)))))))))))..)))))))....((((.......))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039727
"Unfertilized eggs, untreated"
..............................................................ATGGACTGCGCCCTCCAAAT...................................................................................... 20 0 19 0.16 3 0 0 1 1 1 0 0 0 0 0 0
........................................................GTATGAATGGACTGCGCCCT............................................................................................ 20 0 17 0.12 2 0 0 1 1 0 0 0 0 0 0 0
.........................................................AATGAATGGACTGCGCCCT............................................................................................ 19 1 18 0.11 2 0 1 0 0 0 0 0 0 1 0 0
........................................................TTATGAATGGACTGCGCCCT............................................................................................ 20 1 18 0.11 2 0 1 0 0 0 0 0 0 0 1 0
.............................................................AATGGACTGCGCCCTCCAA........................................................................................ 19 0 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................AGTATGAATGGACTGCGCCCT............................................................................................ 21 0 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................AGTATGAATGGACTGCGCCC............................................................................................. 20 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
......................................................GAGTATGAATGGACTGCGCCCT............................................................................................ 22 0 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................TGAGTAAGAATGGACTGCGCCCTCCAAAT...................................................................................... 29 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0
......................................................GAGTAGGAATGGACTGCGCCCTCCAAAT...................................................................................... 28 1 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................ACTGGACTGCGCCCTCCAAAT...................................................................................... 21 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.............................................................TATGGACTGCGCCCTCCAAAT...................................................................................... 21 1 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................GAAGGGACGGCGCCCTCCAAAT...................................................................................... 22 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................AATGGACTGCGCCCTCCAAAT...................................................................................... 21 0 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0
........................................................TTTTGAATGGACTGCGCCCT............................................................................................ 20 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TATTTTGTGACTTTACCTCGAT........... 22 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Generated: 08/21/2014 at 09:07 AM