ID:

nve-mir-9413-1

 Coordinate:

scaffold_3515:1423-1490 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.4
mature
  1. scaffold_3515:1430-1451 -
  2. scaffold_230:176347-176368 -
star
  1. scaffold_3515:1459-1480 -
  2. scaffold_230:176376-176397 -

Sense Strand Reads

CGCATAATTTATTTTTGTTACATTTATTTTTTATCTTAAGACAAGATCAGCTGCTGAAACCATATCACTTATCACTTAATGGATTATCCTAAAAGTGATCAGTGGTAAGGTTTCAGTAGCTGGTTACGCAGGTATCAGTGAGATCACACACCACAATCAAGGATGTCT
*********************************************((((((((((((((((.(((((((.(((((((...(((...)))...))))))).))))))).))))))))))))))))..****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039731
"Adult females, untreated"		 SRR039732
"Adult females, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039758
"Early planula, untreated"		 SRR039760
"Late planula, untreated"
.........................................................................................TAAAAGTGATCAGTGGTAAGGT......................................................... 22 0 2 386.00 772 360 386 10 4 6 3 1 1 1 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAGGTT........................................................ 23 0 2 18.50 37 22 14 0 1 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGATCAGTGGTAAGGT......................................................... 22 1 2 8.00 16 6 10 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAGG.......................................................... 21 0 2 6.50 13 9 4 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAGTT......................................................... 22 1 2 5.00 10 8 2 0 0 0 0 0 0 0 0 0
............................................................CATATCACTTATCACTTAATGG...................................................................................... 22 0 2 5.00 10 7 1 1 1 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAGGG......................................................... 22 1 2 4.00 8 3 5 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGCGATCAGTGGTAAGGT......................................................... 22 1 2 3.00 6 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAGATCAGTGGTAAGGT......................................................... 22 1 2 3.00 6 5 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAGGC......................................................... 22 1 2 3.00 6 1 5 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAG........................................................... 20 0 2 3.00 6 5 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGCAAGGT......................................................... 22 1 2 2.00 4 1 3 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATTAGTGGTAAGGT......................................................... 22 1 2 2.00 4 1 2 0 0 0 1 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGCGGTAAGGT......................................................... 22 1 2 2.00 4 1 3 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAGGTTT....................................................... 24 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGTTAAGGT......................................................... 22 1 2 1.50 3 1 2 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGATCAGCGGTAAGGT......................................................... 22 2 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAA............................................................ 19 0 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAGAGTGATCAGTGGTAAGGT......................................................... 22 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTTGTAAGGT......................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTCAGGT......................................................... 22 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGGTCAGTGGTAAGGT......................................................... 22 1 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................CAAAAGTGATCAGTGGTAAGGT......................................................... 22 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGGAAGGT......................................................... 22 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................AAAAGTGATCAGTGGTAAGGT......................................................... 21 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGAGCAGTGGTAAGGT......................................................... 22 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAGATCAGTGGTAAGGA......................................................... 22 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCACTGGTAAGGT......................................................... 22 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAATGT......................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAGGTTTT...................................................... 25 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGAAAGTGATCAGTGGTAAGGT......................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGATCAGCGGTAAGGA......................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAGAAGTGATCAGTGGTAAGGT......................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATAAGTGGTAAGGT......................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGCGATCAGTGGCAAGGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAGGA......................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAGATCAGTGGTAAGGG......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................CAAAAGGGATCAGTGGTAAGGT......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAACAGTGATCAGTGGTAAGGT......................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAAGT......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGAAAGGT......................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGTTAAGG.......................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAGATCAGCGGTAAGGGT........................................................ 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTTAGGT......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................GAAAAGAGATCAGTGGTAAGGT......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAATTGATCAGTGGTAAGGT......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAATGGTAAGGT......................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGATCAGTGGTAAGGTT........................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGCGATCAGTGGGAAGGT......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................CAAGATCAGCTGCTGAAACT........................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGCAAGGG......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGAGCTGTGGTAAGGT......................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAGATCAGTCGTAAGGT......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................CAAGATCAGCTGCTGAAAC............................................................................................................ 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAGAAGTCATCAGTGGTAAGGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TATAAGAGATCAGTGGTAAGGTT........................................................ 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGATCAGTGGGAAGGTT........................................................ 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGATCAGTGGTAAGGC......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATTAGTGGTAAGG.......................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTA............................................................. 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGAGCAGTGGTAAGGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAGATCAGCGGTAAGGT......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAATGTGATCAGTGGTAAGGT......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAGAT......................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGCGATCAGTGGTAACGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGCGGCAAGGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTCAGTAGCTGGTTACGCAGGTATCAGTGA........................... 30 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGCGATCAGTGGTAAGGCT........................................................ 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAATTT......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAAATCAGTGGTAAGGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGAACAGTGGTAAGGT......................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGAAAGTGATCAGTGGGAAGGT......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGATCAGTGGAAAGGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGATAAGGT......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGCGATCAGTGGTAAGGTT........................................................ 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTCATCAGTGGTAAGGT......................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGGTAAGCT......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAGATCAGGGGTAAGGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGATCAGTGGTAAGGA......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TATAAGTGATCAGTGGTAAGGT......................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGCGATCAGTGGTAAGGA......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTTTATCTTAAAAGTGATCAGTGGTAAGGT......................................................... 30 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGATCAGTGGTATGGT......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCATTGGTAATGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTGTTAATGT......................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGTTGAAAGGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAAAGTGATCAGTGGTAAGGC......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................TAAAGTGATCAGTGGTAAGGT......................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAGGAGATCAGTGGTAAGGT......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................................CATATCACGTAGCACTTAATGG...................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGCGATAAGAGGTAAGGT......................................................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCGGTGGAAAGGAT........................................................ 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGCGATAAGTGGGAAGGT......................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGACCAGCGGTAAGGA......................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGGGGGAAGGC......................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAGAGCAGTGGTAAGGG......................................................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAGATCAGTGGGAAGGG......................................................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGAGCAGGGGTAAGGG......................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TGGTAAAAGTGATCAGTGGTAAGGT......................................................... 25 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTTCTCAGTGGTCAGGT......................................................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGAGCAGTGGTAAGCT......................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGGGAGCAGTGGCAAGGT......................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGTGATCAGAGGCAAGGG......................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................AAAAAGAGATCAGTAGTAAGGTT........................................................ 23 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGCGATCAGTGGCAAGGC......................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAGAGATCTGTGGTTAGGT......................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
............TTTTGTTACATTTAT............................................................................................................................................. 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................AATGCAGGTATAAGTGAGAT........................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GCGTATTAAATAAAAACAATGTAAATAAAAAATAGAATTCTGTTCTAGTCGACGACTTTGGTATAGTGAATAGTGAATTACCTAATAGGATTTTCACTAGTCACCATTCCAAAGTCATCGACCAATGCGTCCATAGTCACTCTAGTGTGTGGTGTTAGTTCCTACAGA
******************************************((((((((((((((((.(((((((.(((((((...(((...)))...))))))).))))))).))))))))))))))))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 08/21/2014 at 10:13 AM