ID:

nve-mir-9412-2

 Coordinate:

scaffold_99:345542-345609 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.3 -20.2 -20.2 -18.1
mature
  1. scaffold_3334:9771-9793 +
  2. scaffold_3147:1272-1294 +
  3. scaffold_601:47040-47062 +
  4. scaffold_553:36684-36706 +
  5. scaffold_539:41965-41987 +
  6. scaffold_430:149151-149173 +
  7. scaffold_311:209023-209045 +
  8. scaffold_311:210891-210913 +
  9. scaffold_306:178973-178995 +
  10. scaffold_298:274943-274965 +
  11. scaffold_260:130710-130732 +
  12. scaffold_256:135407-135429 +
  13. scaffold_132:217456-217478 +
  14. scaffold_88:286609-286631 +
  15. scaffold_72:701627-701649 +
  16. scaffold_76:739602-739624 +
  17. scaffold_62:884704-884726 +
  18. scaffold_55:1072763-1072785 +
  19. scaffold_29:249426-249448 +
  20. scaffold_14:1788498-1788520 +
  21. scaffold_4021:8282-8304 +
  22. scaffold_3787:3208-3230 +
  23. scaffold_3749:5356-5378 +
  24. scaffold_2765:3959-3981 +
  25. scaffold_2544:101-123 +
  26. scaffold_2573:1829-1851 +
  27. scaffold_581:61393-61415 +
  28. scaffold_549:77906-77928 +
  29. scaffold_522:46280-46302 +
  30. scaffold_191:29498-29520 +
  31. scaffold_182:228319-228341 +
  32. scaffold_170:58099-58121 +
  33. scaffold_164:417108-417130 +
  34. scaffold_147:281314-281336 +
  35. scaffold_110:126696-126718 +
  36. scaffold_63:698547-698569 +
  37. scaffold_35:142904-142926 +
  38. scaffold_17:1429235-1429257 +
  39. scaffold_10:1817831-1817853 +
  40. scaffold_5:867374-867396 +
  41. scaffold_8746:509-531 +
  42. scaffold_8108:3138-3160 +
  43. scaffold_2639:6794-6816 +
  44. scaffold_865:11854-11876 +
  45. scaffold_429:5985-6007 +
  46. scaffold_429:8089-8111 +
  47. scaffold_394:41112-41134 +
  48. scaffold_360:48878-48900 +
  49. scaffold_267:54795-54817 +
  50. scaffold_234:183524-183546 +
  51. scaffold_165:288345-288367 +
  52. scaffold_104:484054-484076 +
  53. scaffold_104:703221-703243 +
  54. scaffold_97:104703-104725 +
  55. scaffold_60:917093-917115 +
  56. scaffold_57:264586-264608 +
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  58. scaffold_47:194097-194119 +
  59. scaffold_32:369842-369864 +
  60. scaffold_5:857961-857983 +
  61. scaffold_7392:3475-3497 +
  62. scaffold_6758:4256-4278 +
  63. scaffold_4046:42-64 +
  64. scaffold_962:22770-22792 +
  65. scaffold_511:73188-73210 +
  66. scaffold_488:28499-28521 +
  67. scaffold_441:114647-114669 +
  68. scaffold_367:74813-74835 +
  69. scaffold_307:108624-108646 +
  70. scaffold_295:270007-270029 +
  71. scaffold_206:311955-311977 +
  72. scaffold_184:73042-73064 +
  73. scaffold_150:356699-356721 +
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  76. scaffold_59:793200-793222 +
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  79. scaffold_11750:920-942 +
  80. scaffold_7228:4532-4554 +
  81. scaffold_3010:5201-5223 +
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  83. scaffold_431:97921-97943 +
  84. scaffold_306:199184-199206 +
  85. scaffold_260:186131-186153 +
  86. scaffold_201:174042-174064 +
  87. scaffold_201:346750-346772 +
  88. scaffold_173:177883-177905 +
  89. scaffold_99:153879-153901 +
  90. scaffold_55:639142-639164 +
  91. scaffold_55:640780-640802 +
  92. scaffold_609:52905-52927 -
  93. scaffold_539:75124-75146 -
  94. scaffold_534:2284-2306 -
  95. scaffold_487:89528-89550 -
  96. scaffold_429:91043-91065 -
  97. scaffold_396:34247-34269 -
  98. scaffold_391:182253-182275 -
  99. scaffold_387:187038-187060 -
  100. scaffold_367:203723-203745 -
  101. scaffold_367:206118-206140 -
  102. scaffold_343:173352-173374 -
  103. scaffold_222:177162-177184 -
  104. scaffold_176:96180-96202 -
  105. scaffold_114:136067-136089 -
  106. scaffold_72:660335-660357 -
  107. scaffold_62:558547-558569 -
  108. scaffold_60:276224-276246 -
  109. scaffold_36:991203-991225 -
  110. scaffold_33:662029-662051 -
  111. scaffold_21:1116294-1116316 -
  112. scaffold_5267:468-490 +
  113. scaffold_293:196725-196747 +
  114. scaffold_99:345546-345568 +
  115. scaffold_41:907841-907863 +
  116. scaffold_18:1075515-1075537 +
  117. scaffold_23:689485-689507 +
  118. scaffold_17:640699-640721 +
  119. scaffold_6225:6708-6730 -
  120. scaffold_4353:3546-3568 -
  121. scaffold_3224:8797-8819 -
  122. scaffold_1995:5242-5264 -
  123. scaffold_1177:9838-9860 -
  124. scaffold_669:15461-15483 -
  125. scaffold_592:40048-40070 -
  126. scaffold_531:56305-56327 -
  127. scaffold_465:78801-78823 -
  128. scaffold_465:82032-82054 -
  129. scaffold_343:75938-75960 -
  130. scaffold_233:250252-250274 -
  131. scaffold_226:58270-58292 -
  132. scaffold_206:80144-80166 -
  133. scaffold_117:445669-445691 -
  134. scaffold_95:35228-35250 -
  135. scaffold_71:41261-41283 -
  136. scaffold_46:1026417-1026439 -
  137. scaffold_47:463053-463075 -
  138. scaffold_5:1969404-1969426 -
  139. scaffold_407:75394-75416 +
  140. scaffold_9922:2366-2388 -
  141. scaffold_4990:6890-6912 -
  142. scaffold_3681:4086-4108 -
  143. scaffold_2601:8564-8586 -
  144. scaffold_1856:18631-18653 -
  145. scaffold_1177:7208-7230 -
  146. scaffold_612:67408-67430 -
  147. scaffold_507:33254-33276 -
  148. scaffold_412:44387-44409 -
  149. scaffold_407:139969-139991 -
  150. scaffold_352:162907-162929 -
  151. scaffold_272:256340-256362 -
  152. scaffold_178:201547-201569 -
  153. scaffold_178:293746-293768 -
  154. scaffold_137:337045-337067 -
  155. scaffold_72:186254-186276 -
  156. scaffold_70:120123-120145 -
  157. scaffold_46:821191-821213 -
  158. scaffold_15:213312-213334 -
  159. scaffold_9:1933276-1933298 -
  160. scaffold_2938:8442-8464 -
  161. scaffold_2938:10041-10063 -
  162. scaffold_2260:8493-8515 -
  163. scaffold_1503:2230-2252 -
  164. scaffold_1298:28774-28796 -
  165. scaffold_643:12847-12869 -
  166. scaffold_386:87700-87722 -
  167. scaffold_382:28373-28395 -
  168. scaffold_344:143077-143099 -
  169. scaffold_159:232438-232460 -
  170. scaffold_113:511688-511710 -
  171. scaffold_104:18921-18943 -
  172. scaffold_101:623126-623148 -
  173. scaffold_48:319551-319573 -
  174. scaffold_42:390219-390241 -
  175. scaffold_37:976301-976323 -
  176. scaffold_37:1015125-1015147 -
  177. scaffold_25:38412-38434 -
  178. scaffold_24:840881-840903 -
  179. scaffold_21:326012-326034 -
  180. scaffold_6791:6138-6160 +
  181. scaffold_5227:5350-5372 +
  182. scaffold_5227:7026-7048 +
  183. scaffold_2463:9345-9367 +
  184. scaffold_597:12356-12378 +
  185. scaffold_281:12619-12641 +
  186. scaffold_283:145066-145088 +
  187. scaffold_283:150133-150155 +
  188. scaffold_256:130999-131021 +
  189. scaffold_207:310121-310143 +
  190. scaffold_35:145234-145256 +
  191. scaffold_35:149981-150003 +
  192. scaffold_3476:4573-4595 -
  193. scaffold_489:60664-60686 -
  194. scaffold_156:414600-414622 -
  195. scaffold_123:35598-35620 -
  196. scaffold_7928:3641-3663 +
  197. scaffold_4384:7534-7556 +
  198. scaffold_2712:12675-12697 +
  199. scaffold_2119:12447-12469 +
  200. scaffold_1159:35285-35307 +
  201. scaffold_1050:30814-30836 +
  202. scaffold_661:49207-49229 +
  203. scaffold_522:34057-34079 +
  204. scaffold_424:167653-167675 +
  205. scaffold_201:63626-63648 +
  206. scaffold_205:36379-36401 +
  207. scaffold_205:41242-41264 +
  208. scaffold_173:175296-175318 +
  209. scaffold_95:599094-599116 +
  210. scaffold_80:152246-152268 +
  211. scaffold_18:1436027-1436049 +
  212. scaffold_26:339578-339600 +
  213. scaffold_27:417746-417768 +
  214. scaffold_23:832842-832864 +
  215. scaffold_17:344409-344431 +
  216. scaffold_3681:1861-1883 -
  217. scaffold_79:605191-605213 -
  218. scaffold_37:642013-642035 -
  219. scaffold_23:822488-822510 -
  220. scaffold_5:971655-971677 -
star

Sense Strand Reads

aataaataattgttttcactctttcatgaaccaggaactacctgagggccaagatgaatgctaaagactggaagacatgggaattaaaaaccatgtcttgaagagaacagtaagggagttcttattcactagtcatttcgtacccccacatccatggttccagaaaag
***************************************..((...(((..........)))..))(((((.((((((((..........))))))))((((((((((.........)))))).)))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039758
"Early planula, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039757
"Gastrula, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039755
"Adult males, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039754
"Adult males, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039726
"Blastula, untreated"
......................................................TGAATGCTAAAGACTGGAAGACA........................................................................................... 23 0 20 39.35 787 499 288 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGACAT.......................................................................................... 24 0 20 8.85 177 0 0 113 42 22 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGACATGGGA...................................................................................... 28 0 20 3.45 69 7 6 2 5 4 5 5 8 7 4 2 2 5 1 2 3 1 0
......................................................TGAATGCTAAAGACTGGAAGACATGGG....................................................................................... 27 0 20 2.15 43 2 3 6 8 2 7 3 2 2 1 4 0 0 1 2 0 0 0
.......................................................GAATGCTAAAGACTGGAAGACAT.......................................................................................... 23 0 20 1.50 30 0 0 0 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGAC............................................................................................ 22 0 20 1.20 24 0 0 0 11 0 13 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGTCTTGAAGAGAACAGTAAGGGAG.................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AAAGACTGGAAGACATGGGAATTAAAAACC............................................................................ 30 0 20 0.50 10 1 0 0 1 2 2 0 0 0 1 0 2 0 0 0 1 0 0
......................................................TGAATGCTAAAGACTGGAAGACATG......................................................................................... 25 0 20 0.40 8 0 0 0 5 0 0 2 0 0 0 0 0 0 0 0 0 1 0
.......................................................GAATGCTAAAGACTGGAAGACATGGGA...................................................................................... 27 0 20 0.35 7 1 0 1 1 0 1 0 1 0 0 0 1 1 0 0 0 0 0
..................................................................................................................GGAGTTCTTATTCACTAGTCATTT.............................. 24 0 20 0.30 6 2 0 0 1 0 0 0 0 0 0 0 0 0 2 0 1 0 0
......................................................TGAATGCTAAAGACTGGAAGACATGG........................................................................................ 26 0 20 0.30 6 1 0 0 0 1 0 3 0 0 0 1 0 0 0 0 0 0 0
...................................................................................TTAAAAACCATGTCTTGAAGAGAACAGT......................................................... 28 0 20 0.20 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................TGAATGCTAAAGACTGGAAGACATGGGAAT.................................................................................... 30 0 20 0.20 4 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGACATGGGAA..................................................................................... 29 0 20 0.20 4 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTTGAAGACA........................................................................................... 23 1 20 0.20 4 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AAAGACTGGAAGACATGGGAATTAAAAAC............................................................................. 29 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0
..................................................................................................................GGAGTTCTTATTCACTAGTCATT............................... 23 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0
..............................................................AAAGACTGGAAGACATGGGAATTAAAAACCA........................................................................... 31 0 20 0.15 3 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................ATGCTAAAGACTGGAAGACATGG........................................................................................ 23 0 20 0.15 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GAATGCTAAAGACTGGAAGACATGG........................................................................................ 25 0 20 0.10 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TTAAAAACCATGTCTTGAAGAGA.............................................................. 23 0 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................TGAATGCTAAAGACTGGAAGACGTGGGA...................................................................................... 28 1 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................TGAATGCTAAAGAATGGAAGACAT.......................................................................................... 24 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAATGACTGGAAGACA........................................................................................... 23 1 20 0.10 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGCAGACAT.......................................................................................... 24 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0
......................................................TGAATGCTAAATACTGGAAGACA........................................................................................... 23 1 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGACAG.......................................................................................... 24 1 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGATTGGAAGAC............................................................................................ 22 1 20 0.10 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAAGGAGAAAGACTGGAAGACATGGG....................................................................................... 27 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAGGACTTGAAGACA........................................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................GAATGCAAAAGACTGGAAGACAT.......................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................AAAGACTGGAAGACACGGGAATTAAAAACC............................................................................ 30 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTTTAATACAT.......................................................................................... 24 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTAAAAACCATGTCTTGAAGACAA............................................................. 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGGCA........................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTAAAAACCATGTTTTGAAGAGA.............................................................. 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................ATGTCTTGAAGAGAA............................................................. 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAATACA........................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTACAGACTGGAAGACA........................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................TTAAAAACCATGTCTTGAAGA................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................TGAATGCTAAATACTGGAAGACATGGG....................................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TTAATGCTAAAGACTGGAAGACATGGGA...................................................................................... 28 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAAGGCTAAAGACTGGACGACATGGGA...................................................................................... 28 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................TGAATGTTAAAGACTGGAAGACATGG........................................................................................ 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGAGTTCTTATTCACTAGTCATTT.............................. 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATCCTAAAGACTGGAAGACA........................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................TGAATGCGAAAGACTGGAAGACATGGGT...................................................................................... 28 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGACTTGGGA...................................................................................... 28 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGGCAT.......................................................................................... 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGACTGCTAAAGACTGGAAGACAT.......................................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGTAGACATGGG....................................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................TGAATGCTAACGACTGGAAGACATGGGA...................................................................................... 28 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................TGAAGGCTAAAGAATGGAAGACATGG........................................................................................ 26 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCGAAAGACTGGAAGACATGGGA...................................................................................... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAGTGCAAAAGACTGGAAGACATGGGA...................................................................................... 28 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................AAGACTGGAAGACATGGGAATTAAAAACCA........................................................................... 30 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GAATGCTAAAGACTCGAAGACA........................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGAATGGAAGACATGGGA...................................................................................... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAATGACTGGAAGACAT.......................................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................AAGACTGGAAGACATGGGAATTAAAAAC............................................................................. 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................GAATGCTAAAGACTGGAAGACATGGT....................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................TGGATGCTAAAGACTGGAGGACATGGGA...................................................................................... 28 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACCGGAAGCCAT.......................................................................................... 24 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGGCATGGG....................................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................TGAATGCTAAGGACTGGAAGACATGGG....................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGACTGCTCAAGACTGGAAGACATGGGA...................................................................................... 28 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGACG........................................................................................... 23 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................ATGAATGCTAAAGACTGGAAGACA........................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAATACTGGAATACA........................................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................GAATGCTAAAGACTGGAAGA............................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AAAGACTGGAAGACATGGGAATT................................................................................... 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GGAGTTCTTATTCACTAGTCAT................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................TGATTGCTAAAGACTGGAAGACA........................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGTCTGGAATACA........................................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................TGAATGCTTAAGACGGGAAGAAATGGGA...................................................................................... 28 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGCTAAAGACTGGAAGACATGGGA...................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................TGAATGCTACAGACTGGAAGCCA........................................................................................... 23 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................TGGATGCTAAAGACTGGCAGACATGGGG...................................................................................... 28 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACAGGAAGACA........................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGTAAGACCT.......................................................................................... 24 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAGGACATGGGTA..................................................................................... 29 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................ATGCTAAAGACTGGAAGACA........................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTCGAAGACA........................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTAAAAACCATGTCTTGAAGAGAA............................................................. 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................TAAATGCTAAAGACAGGAACACATGGG....................................................................................... 27 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAATACATGGGA...................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGACGTGGGGG..................................................................................... 29 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTCGAAGACAT.......................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAATAC............................................................................................ 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTAAAAACCATGTCTTGAAGAGAACAGTT........................................................ 29 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................ATGCTAAAGACTGGAAGACATGGGT...................................................................................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAGACTGGAAGACATGGGAATTA.................................................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................AAAAACCATGTCTTGAAGA................................................................ 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGAGTTCTTATTCACTAGTCAT................................ 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................TGAATGCTAAAGACTTGAAGACATGGG....................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAAGGATAAAGACTGGAAGACATGGGA...................................................................................... 28 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GGAGTTCTTATTCGCTAGTCATT............................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................TGAATGCTAAAGACTGTAAGACA........................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................GCCAAGATGAATGCTAAAGACTGGAAGAC............................................................................................ 29 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................CTAAAGACTGGAAGACAT.......................................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGACC........................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGACGACATGGGA...................................................................................... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GAATGCTAAAGACTGGA................................................................................................ 17 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................TGAATGCTAAAGACTGGAAGGCGTGGGA...................................................................................... 28 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................AAGACTGGAAGACATGGGAATTAAAAACC............................................................................ 29 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................TGAAGGCTAAAGACTGGAAGACAG.......................................................................................... 24 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAATGATAAAGACCGGAAGACATGGGA...................................................................................... 28 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TTtTTTtTTttgttttGTGtGtttGTtgTTGGTggTTGtTGGtgTgggGGTTgTtgTTtgGtTTTgTGtggTTgTGTtgggTTttTTTTTGGTtgtGttgTTgTgTTGTgtTTgggTgttGttTttGTGtTgtGTtttGgtTGGGGGTGTtGGTtggttGGTgTTTTg
***********************************..((...(((..........)))..))(((((.((((((((..........))))))))((((((((((.........)))))).)))))))))*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039756
"Gastrula, untreated"		 SRR039758
"Early planula, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039754
"Adult males, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039731
"Adult females, untreated"
.....................................GATGGACTCCCGGTTCTACTTACGATT........................................................................................................ 27 0 20 1.95 39 0 32 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGGACTCCCGGTTCTACTTACGATT........................................................................................................ 25 0 20 1.25 25 9 0 9 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ATTCCTTCAAGAATAAGTGATCAGT................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGATGGACTCCCGGTTCTACTTACGATTT....................................................................................................... 29 0 20 0.40 8 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TTGATGGACTCCCGGTTCTACTTACGATT........................................................................................................ 29 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CTCCCGGTTCTACTTACGATTTCTGACCT................................................................................................ 29 0 20 0.25 5 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0
........................................GGACTCCCGGTTCTACTTACGATT........................................................................................................ 24 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GATGGACTCCCGGTTCTACTTACGATTT....................................................................................................... 28 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0
......................................ATGGACTCCCGGTTCTACTTACGATT........................................................................................................ 26 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0
............................................TCCCGGTTCTACTTACGATTTCTGACCT................................................................................................ 28 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0
....................................TGATGGACTCCTGGTTCTACTTACGATT........................................................................................................ 28 1 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0
....................................TGATGGCCTCCCGGTTCTACTTACGATT........................................................................................................ 28 1 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
...............................................CGTTTCTACTTACGATT........................................................................................................ 17 1 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................CTTTATGGACTCCCGGTTCTACTTACGATT........................................................................................................ 30 1 20 0.10 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CCCGGTTCTACTTACGATTTCTGACCT................................................................................................ 27 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CTTTATGGACTCCCTGTTCTACTTACGATT........................................................................................................ 30 2 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
........................................GGACTCCTGGTTCTACTTACGATT........................................................................................................ 24 1 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
............................................TCCCGGTTCTACTTACGATTTCTGACCTT............................................................................................... 29 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
................................................GGTTCTACTTACGATTTCTGACCTT............................................................................................... 25 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
.....................................GATGGCCTCCCGGTTCTACTTACGATTT....................................................................................................... 28 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................TGATGGACTCCCGGGTCTACTTACGAT......................................................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................TTGATGGACTCCCTTTTCTACTTACGATT........................................................................................................ 29 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................CTCCCGGTTCTACTGACGATTTCTGACCT................................................................................................ 29 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................TTGCTGGACTCCCGGTTCTACTTCCGATT........................................................................................................ 29 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TTGATGGACTCCCGGTTCTACTTACGATTT....................................................................................................... 30 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CTTGATGGACTCCCGGTTCTACTTACGATG........................................................................................................ 30 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................TTCTACTTACGATTTCTGACCTT............................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................CTTGATGGACTCCCGGTTCTACTTACGCTT........................................................................................................ 30 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................GGTTCTACTTACGATTCCTGACCT................................................................................................ 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................CGGTTCTACATACGATTTCTGACCT................................................................................................ 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................CGGTTCTACTTACGATTTCTGACCT................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................TGATGGACTCCCGGTTCTACTCACGATT........................................................................................................ 28 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................CCGGTTCTACTTACGATT........................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................TCCGGGTTCTACTTACGATTTCTGACCT................................................................................................ 28 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................CTCCCGTTTCTACTTACGATT........................................................................................................ 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TCCCGGTTCTACTCACGATTTCTGACCT................................................................................................ 28 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................ATGGACTCCGGGTTCTACTTACGATT........................................................................................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................TGATGGACTCCCGTTTCTACTTACGATT........................................................................................................ 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CTTGATGGACTTCCGGTTCTACTTACGATT........................................................................................................ 30 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................CTCCCGGGTCTACTTACGATTTCTGACCT................................................................................................ 29 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TCTCCCGGTTCTACTTACGATTTCTGACCT................................................................................................ 30 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TGGACACCCGCTTCTACTTACGATTTCT..................................................................................................... 28 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................TGGACTCCCGGTTCTACTT.............................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................CTCCCGGTTCTACTTACGATTTCTGAC.................................................................................................. 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTCTACTTACGATTTATGACCT................................................................................................ 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GATGGACTCCCGGTTCTAGTT.............................................................................................................. 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CTTGATGGACTCCCTGTTCTACTTACGATT........................................................................................................ 30 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................GACTCCCGGTTCTACTTACGATTTCT..................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................CTTGAAGGACTCCCGGTTCTACTTACGATT........................................................................................................ 30 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................ATGGACTCCCGTTTCTACT............................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................CTTGATGGACTCCAGGTTCTACTTACGATT........................................................................................................ 30 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Generated: 08/21/2014 at 10:56 AM