ID:

nve-mir-2051

 Coordinate:

scaffold_231:5180-5273 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.4 -26.2 -25.8

Sense Strand Reads

GACTTCAGCTTCGAGACGAGTCGGAAAAGGAAAAGAAAAAAACACACGACATGTACGGGCCCGCCTATGAAAATAGAAAAGCTTCCGGTTTTTTGACATCGCAATACCGGAGTCTTTTCTGTGTCCATATTCGTGACCAGAATCAATTTAGAGATTTGGAGTTCGACATCCTACAAAGTGCTGCTTGTTACATC
*******************************************************.((...((..((((...(((((((((.(((((((...(((......))).))))))).)))))))))...))))..))...))...***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039726
"Blastula, untreated"		 SRR039729
"Blastula, oxidized"		 SRR039756
"Gastrula, untreated"		 SRR039758
"Early planula, untreated"		 SRR039732
"Adult females, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039763
"Metamorphosing individuals, oxidized"
........................................................................................................TACCGGAGTCTTTTCTGTGTCC.................................................................... 22 0 1 57.00 57 35 16 1 2 0 0 1 1 0 0 1 0
......................................................................AAATAGAAAAGCTTCCGGTTTT...................................................................................................... 22 0 1 17.00 17 9 6 0 0 0 1 0 0 0 0 0 1
........................................................................................................TACCGGAGTCTTTTCTGTGT...................................................................... 20 0 1 9.00 9 8 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTG....................................................................... 19 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0
......................................................................AAATAGAAAAGCTTCCGGTTT....................................................................................................... 21 0 1 5.00 5 2 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTGTCT.................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACTGGAGTCTTTTCTGTGTCC.................................................................... 22 1 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................TACCGGAGTCTTTTCTTTGTCC.................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................ACCGGAGTCTTTTCTGTGTC..................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AATAGAAAAGCTTCCGGTTTT...................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTGTCCT................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTTA...................................................................... 20 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGT........................................................................ 18 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTA....................................................................... 19 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................AATAGAAAAGCTTCCGGTTTA...................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................AAAAGCTTCCGGTTTT...................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................ATAGAAAAGCTTCCGGTTT....................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AATAGAAAAGCGTCCGGTT........................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCGGTGTCC.................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTGTCA.................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTGTC..................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTTT...................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGACTATTCTGTGTCC.................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................TACCGGAGTCGTTTCTGTGTCC.................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTT....................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AAAATAGAAAAGCTTCCGGTTTT...................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTTTTTCC.................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTTTTTCCT................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AATAGAAAAGCTTCCGGTTT....................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................TACCGGGGTCTTTTATGTGTCC.................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTGTTAT................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTAT........................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................AATAGAAAAGCTGCCGGTTTT...................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTATTTTCTATGT...................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTGTCTATA................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................AATAGAAAAGCGTCCGGTTTT...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TATCGGAGTCTTTTCTGTGTCC.................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTGTTT.................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................AAATAGAAAAGCTTCCGGGTGT...................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AATAGAAAAGCGTCCGGTTT....................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................AAATAGAAATGCTTCCCGTTTT...................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGCGTCC.................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGTTTT..................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTTTTCTGA........................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................AATAGAACAGCTTCCTGTTT....................................................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTCTCTTCTGAG....................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................AAATATAAAAGCTTCCTGTTT....................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TACCGGAGTTTTTTCTGTGAA..................................................................... 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTGAAGTCGAAGCTCTGCTCAGCCTTTTCCTTTTCTTTTTTTGTGTGCTGTACATGCCCGGGCGGATACTTTTATCTTTTCGAAGGCCAAAAAACTGTAGCGTTATGGCCTCAGAAAAGACACAGGTATAAGCACTGGTCTTAGTTAAATCTCTAAACCTCAAGCTGTAGGATGTTTCACGACGAACAATGTAG
*****************************************************.((...((..((((...(((((((((.(((((((...(((......))).))))))).)))))))))...))))..))...))...******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039756
"Gastrula, untreated"		 SRR039754
"Adult males, untreated"		 SRR039757
"Gastrula, oxidized"		 SRR039755
"Adult males, oxidized"
......................................................................TTTATCTTTTCGAAGGCCAAA....................................................................................................... 21 0 1 1.00 1 1 0 0 0
..........................................GTGCGCTGTACATGGCAGGGC................................................................................................................................... 21 3 2 0.50 1 0 1 0 0
..........................TTCCGTTTCTTTTTTACTGTGCT................................................................................................................................................. 23 3 5 0.20 1 0 0 1 0
..........................................................................................................GGTCTCAGAAAAGACA........................................................................ 16 1 20 0.05 1 0 0 0 1

Generated: 08/21/2014 at 09:40 AM