ID:

nve-mir-2047

 Coordinate:

scaffold_3670:1176-1277 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-59.4
mature
  1. scaffold_3670:1204-1225 +
  2. scaffold_364:11278-11299 +
star

Sense Strand Reads

ATGGTATGGATATTGATGTGGTTATATTGGCGGTTGGTTGCGTTTTGAAAATCCGGGAGTAAATTCGTAACTGCTCAATTCGCCGAGCAGATGTCGGAGAGTTCAACTGTCAGACATCTGCTCGGCGAATTGAGCAGTTATTTTGACCAAGAAAATGCACTATGTATGGTGGAACAAACGTGGGAAAGGGATAGCTGTGGAC
***************************************************************...(((((((((((((((((((((((((((((.((.(((...))).)).))))))))))))))))))))))))))))).....******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039756
"Gastrula, untreated"		 SRR039758
"Early planula, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039760
"Late planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039757
"Gastrula, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039727
"Unfertilized eggs, untreated"
..............................................................................TTCGCCGAGCAGATGTCGGAGA...................................................................................................... 22 0 2 67.50 135 75 11 5 16 8 4 3 1 3 4 1 2 2 0 0
.............................................................................................................TCAGACATCTGCTCGGCGAATT....................................................................... 22 0 1 11.00 11 0 4 3 0 0 1 1 2 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGAG....................................................................................................... 21 0 2 10.00 20 10 1 0 0 2 4 0 1 1 0 0 0 0 1 0
..............................................................................TTCGCCGAGCAGATGTCGGA........................................................................................................ 20 0 3 5.33 16 5 5 4 0 0 1 1 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGG......................................................................................................... 19 0 3 5.00 15 6 0 4 0 1 1 3 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGAGAG..................................................................................................... 23 0 2 4.50 9 5 1 0 1 1 0 0 0 1 0 0 0 0 0 0
...............................................................................TCGCCGAGCAGATGTCGGAGAG..................................................................................................... 22 0 2 1.50 3 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................TCAGACAACTGCTAGGCGAATT....................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTTGGAGA...................................................................................................... 22 1 2 1.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGAGAA..................................................................................................... 23 1 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCG.......................................................................................................... 18 0 3 1.00 3 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0
..............................................................................TTCGCCGACCAGATGTCGGAGA...................................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGAGAT..................................................................................................... 23 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGAT....................................................................................................... 21 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTGGCCGAGCAGATGTCGGAGA...................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGGCGGAGAG..................................................................................................... 23 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGAGAATTC.................................................................................................. 26 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................TTCGCCGAGCAGATGGCGGAGA...................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGTGCAGATGTCGGCGG...................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGAGC...................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGAGGTCGGAGA...................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGGGA...................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................TTCGCCGAGCAGATCTCGGAGAG..................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATTTCGGAGA...................................................................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCCGATGTCGGAGA...................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TCAGACATCTGCTCGGCGAATTTTT.................................................................... 25 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGTAGATGTCGGAGA...................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGCGACGCGCAGATGTCGGAGA...................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGAGT...................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGAAGAGGTCGGAGA...................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTAGGAGA...................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGACGTCGGAGA...................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATTTCGGA........................................................................................................ 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGT........................................................................................................ 20 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TCGCCGAGCAGATGTCGG......................................................................................................... 18 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................TGCGCCGGGCAGATGACGGAGA...................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCTCCGAGCAGATGTCGGATA...................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCGGATGTCGGA........................................................................................................ 20 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................TTCGCCTAGCAGATGTCGG......................................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGAAAA..................................................................................................... 23 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................TTAGCCGAGCAGATGTCGG......................................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCGCCGAGCAGATGTCGGATT...................................................................................................... 22 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................GCCGAGCAGATGTCGGA........................................................................................................ 17 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGGATAATGATGTGGTT................................................................................................................................................................................... 17 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.TGGGATGGATATTAACGTGGT.................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......TGGATATTTGTGTGGTTAT................................................................................................................................................................................. 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TACCATACCTATAACTACACCAATATAACCGCCAACCAACGCAAAACTTTTAGGCCCTCATTTAAGCATTGACGAGTTAAGCGGCTCGTCTACAGCCTCTCAAGTTGACAGTCTGTAGACGAGCCGCTTAACTCGTCAATAAAACTGGTTCTTTTACGTGATACATACCACCTTGTTTGCACCCTTTCCCTATCGACACCTG
********************************************************...(((((((((((((((((((((((((((((.((.(((...))).)).))))))))))))))))))))))))))))).....*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039760
"Late planula, untreated"		 SRR039731
"Adult females, untreated"
..............................................................................................................GTCTGTAGACGAGCCTCTT......................................................................... 19 1 1 1.00 1 1 0 0
............................................................................TTAAGCGGCTCGTCTACAGCCT........................................................................................................ 22 0 3 0.33 1 0 1 0
.............................................................................TAAGCGGCTCGTCTACAGCCT........................................................................................................ 21 0 3 0.33 1 1 0 0
..............................................................................................................AAATGTAGACGAGCCGCTT......................................................................... 19 3 20 0.05 1 0 0 1

Generated: 08/21/2014 at 10:11 AM