ID:

nve-mir-2041b-4

 Coordinate:

scaffold_156:72079-72146 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-72.8
mature
  1. scaffold_2889:10676-10697 +
  2. scaffold_1856:10113-10134 +
  3. scaffold_1384:11667-11688 +
  4. scaffold_903:38034-38055 +
  5. scaffold_708:44414-44435 -
  6. scaffold_529:49895-49916 +
  7. scaffold_522:85315-85336 +
  8. scaffold_445:146044-146065 +
  9. scaffold_230:59339-59360 +
  10. scaffold_156:72123-72144 +
  11. scaffold_148:80173-80194 +
  12. scaffold_137:547825-547846 +
  13. scaffold_115:47683-47704 +
  14. scaffold_108:300287-300308 -
  15. scaffold_94:742367-742388 +
  16. scaffold_55:86136-86157 +
  17. scaffold_22:48783-48804 +
  18. scaffold_6:2098122-2098143 +
  19. scaffold_2:1728354-1728375 +
  20. scaffold_2:2197677-2197698 +
  21. scaffold_104:170287-170308 -
  22. scaffold_36:934818-934839 -
  23. scaffold_708:42682-42703 -
  24. scaffold_550:67063-67084 -
  25. scaffold_292:184251-184272 -
  26. scaffold_227:280903-280924 -
  27. scaffold_169:142502-142523 -
  28. scaffold_161:95227-95248 -
  29. scaffold_154:73661-73682 -
  30. scaffold_94:741307-741328 -
  31. scaffold_74:859963-859984 -
  32. scaffold_34:473971-473992 -
  33. scaffold_17:1404538-1404559 -
  34. scaffold_15:555328-555349 -
  35. scaffold_8:745167-745188 -
  36. scaffold_8:1901220-1901241 -
  37. scaffold_2:1727122-1727143 -
  38. scaffold_1:871389-871410 -
  39. scaffold_88:93562-93583 -
  40. scaffold_8663:3360-3381 -
  41. scaffold_448:105827-105848 -
star

Sense Strand Reads

tttgattctaCCACAGGGAGTCGATGCATCAGAGTCTTTTCATCCTCGGAGACCCAGGGGTATTTTGCTCTAACGTTTCACTCGCGATTGAAATGTTAGAGGAAAATACCCCTGGGTTTCCGAGGATGGAGTCTTTTGTGAGCAAGTTTGTATTATATATCTTTTCGG
***********************************..(((((((((((((((((((((((((((((.(((((((((((((........))))))))))))).)))))))))))))))))))))))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039756
"Gastrula, untreated"		 SRR039758
"Early planula, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039760
"Late planula, untreated"		 SRR039759
"Early planula, oxidized"		 SRR039765
"Primary polyps, oxidized"		 SRR039754
"Adult males, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039755
"Adult males, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039757
"Gastrula, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039732
"Adult females, oxidized"		 SRR039727
"Unfertilized eggs, untreated"		 SRR039726
"Blastula, untreated"
..............................................................................................GTTAGAGGAAAATACCCCTGGG.................................................... 22 0 20 14.65 293 53 43 30 0 34 35 24 6 33 23 4 6 0 2 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGT................................................... 22 0 20 8.95 179 75 32 5 0 21 12 8 14 0 0 0 0 10 1 0 1
...............................................................................................TTAGAGGAAAATACCCCTGG..................................................... 20 0 20 8.25 165 0 69 34 50 0 0 7 0 0 0 3 0 0 0 2 0
...............................................................................................TTAGAGGAAAATACCCCTGGG.................................................... 21 0 20 5.90 118 64 0 18 27 1 2 0 0 1 1 1 3 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGG..................................................... 21 0 20 1.65 33 17 0 6 3 2 0 0 4 0 0 0 1 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGA................................................... 22 1 20 1.05 21 0 0 7 8 2 2 0 0 0 0 2 0 0 0 0 0
...........................................................................TTTCACTCGCGATTGAAATGTTT...................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGTT.................................................. 23 0 20 1.00 20 0 4 1 4 0 0 0 3 2 0 0 4 2 0 0 0
.................................................................TGCTCTTACGTTTCACTCGCGATTAT............................................................................. 26 3 4 0.50 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
...............................................................................................TTGGAGGAAAATACCCCTGGGT................................................... 22 1 20 0.50 10 0 1 2 2 0 0 0 2 0 0 0 1 1 1 0 0
................................................................................................TAGAGGAAAATACCCCTGGGT................................................... 21 0 20 0.30 6 1 1 0 0 0 1 0 0 0 0 0 3 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTT...................................................... 20 1 20 0.25 5 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGAT................................................... 22 1 20 0.25 5 0 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGA.................................................... 21 1 20 0.25 5 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................GTTGGAGGAAAATACCCCTGGG.................................................... 22 1 20 0.25 5 0 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGTTT................................................. 24 0 20 0.20 4 3 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGT................................................... 23 0 20 0.20 4 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0
........................................................................................TTTAGTGTTAGAGGAAAATACCCCTGGG.................................................... 28 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGC.................................................... 22 1 20 0.20 4 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0
................................................................................................TAGAGGAAAATACCCCTGG..................................................... 19 0 20 0.15 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGA................................................... 23 1 20 0.15 3 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TAGAGGAAAATACCCCTGGG.................................................... 20 0 20 0.15 3 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................TTAGAGGAAGATACCCCTGGGT................................................... 22 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGTTA................................................. 24 1 20 0.10 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAGATACCCCTGG..................................................... 20 1 20 0.10 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGTAAAATACCCCTGGGT................................................... 22 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTGGAGGAAAATACACCTGGGT................................................... 22 2 20 0.10 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTG...................................................... 19 0 20 0.10 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAGATACCCCTGGG.................................................... 21 1 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGTAT................................................. 24 1 20 0.10 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACACCTGGG.................................................... 22 1 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................GTTAGAGGAAAATATCCCTGGG.................................................... 22 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTGGAGGAAAATACCCCTGG..................................................... 21 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCAGGG.................................................... 22 1 20 0.10 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAGAATACCCCTGGG.................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATCCCCCTGGG.................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TTGGAGGAAAATACCCCTGGG.................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCATGGGT................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGACAATACCCCCGGG.................................................... 22 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCATC...................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................GTTCGAGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTACAGGAAAATACCCCTG...................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTCGG.................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAATTACCCCTGG..................................................... 20 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GATAGAGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGC.................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAACTACCCCTGGG.................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCCCGGT................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGTT.................................................. 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CTTAGAGGAAAATACCCCTGGGTATA................................................ 26 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAAAGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCAT....................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................TTGGAGGAAAATACCCCTGGGTT.................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGAA.................................................. 24 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCCGGGT................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................TTGGAGGAAAATACCCCTGGGA................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGTA.................................................. 23 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGACGAAAATACCCCTGG..................................................... 21 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGCAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCCGG..................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TAGAGGAAAATACCCCTGGA.................................................... 20 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAACTACCCCTGG..................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTCGGT................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGCGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGC................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTTGG.................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTGGAGGAAAATACCCCTCGG.................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................GGTGGAGGAAAATACCCCTGGG.................................................... 22 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTCGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................GTTAGAGGCACATCCCCCTGGG.................................................... 22 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGGAGGAAAATCCCCCTGGGTT.................................................. 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAAAACCCCTGGA.................................................... 22 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACACCTGG..................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGTAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGCGGAAAATACCCCTGGGT................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGA.................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TAGAGGAAAATACCCCTGGCT................................................... 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CTTAGAGGAAAATACCCCTT...................................................... 20 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAACATACCCCTGG..................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATAGCCCTGGGA................................................... 23 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACTCCTGG..................................................... 20 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TTACAGGAAATTACCCCTGG..................................................... 20 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGTA.................................................. 24 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................TGGAGGAAAATACCCCTGG..................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

tttgTttGtTGGTGTCCCTCAGCTACGTAGTCTCAGAAAAGTAGGAGCCTCTGGGTCCCCATAAAACGAGATTGCAAAGTGAGCGCTAACTTTACAATCTCCTTTTATGGGGACCCAAAGGCTCCTACCTCAGAAAACACTCGTTCAAACATAATATATAGAAAAGCC
***********************************..(((((((((((((((((((((((((((((.(((((((((((((........))))))))))))).)))))))))))))))))))))))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039754
"Adult males, untreated"		 SRR039731
"Adult females, untreated"		 SRR039760
"Late planula, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039758
"Early planula, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039726
"Blastula, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039761
"Late planula, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"
...........................................................TATAAAACGAGATTGCAAAGT........................................................................................ 21 1 20 0.40 8 2 3 0 2 0 0 1 0 0 0 0
.................................................TCCGGGTCCCCATAAAACGAGAT................................................................................................ 23 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................CATAAAACGAGATTGCAAAGT........................................................................................ 21 0 20 0.20 4 3 0 0 1 0 0 0 0 0 0 0
............................................................ATAAAACGAGATTGCAAAGT........................................................................................ 20 0 20 0.15 3 2 0 0 0 0 0 0 1 0 0 0
...........................................................TTTAAAACGAGATTGCAAAGT........................................................................................ 21 2 20 0.15 3 2 0 0 1 0 0 0 0 0 0 0
...........................................................................................ATACAATCTCTTTTTATGGGGAC...................................................... 23 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................CCCATAAAACGAGATTGCAAA.......................................................................................... 21 0 18 0.11 2 0 0 0 1 1 0 0 0 0 0 0
..........................................................ACATAAAACGAGATTGCAAAGT........................................................................................ 22 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
....................................................GGGTCCCCATAAAACGAGATTG.............................................................................................. 22 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 1
........................................................TCCCATAAAACGAGATTGCAAA.......................................................................................... 22 1 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................TTTAACGAGATTGCAAAGT........................................................................................ 19 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................AAAACGAGATTGCAAAGT........................................................................................ 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
............................................................TTTAAACGAGAGTGCAAAGT........................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
............................................................TTAAAACGAGATTGCAAA.......................................................................................... 18 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................TTTAAAACGAGATTCCAAAGT........................................................................................ 21 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................CATAAAACGAGATTGCAAATT........................................................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.................................................................ACGAGATTGCAAAGTGAGC.................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
....................................................GGGTCCCCATTAAATGAGATTG.............................................................................................. 22 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................CATAAAACGACTTTGCAAAGT........................................................................................ 21 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................................................TGGTTCCCCATAAAACGAGATT............................................................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Generated: 08/21/2014 at 09:27 AM