ID:

nve-mir-2041b-2

 Coordinate:

scaffold_108:300285-300352 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.8 -42.3 -42.3 -41.9
mature
  1. scaffold_2889:10676-10697 +
  2. scaffold_1856:10113-10134 +
  3. scaffold_1384:11667-11688 +
  4. scaffold_903:38034-38055 +
  5. scaffold_708:44414-44435 -
  6. scaffold_529:49895-49916 +
  7. scaffold_522:85315-85336 +
  8. scaffold_445:146044-146065 +
  9. scaffold_230:59339-59360 +
  10. scaffold_156:72123-72144 +
  11. scaffold_148:80173-80194 +
  12. scaffold_137:547825-547846 +
  13. scaffold_115:47683-47704 +
  14. scaffold_108:300287-300308 -
  15. scaffold_94:742367-742388 +
  16. scaffold_55:86136-86157 +
  17. scaffold_22:48783-48804 +
  18. scaffold_6:2098122-2098143 +
  19. scaffold_2:1728354-1728375 +
  20. scaffold_2:2197677-2197698 +
  21. scaffold_104:170287-170308 -
  22. scaffold_36:934818-934839 -
  23. scaffold_708:42682-42703 -
  24. scaffold_550:67063-67084 -
  25. scaffold_292:184251-184272 -
  26. scaffold_227:280903-280924 -
  27. scaffold_169:142502-142523 -
  28. scaffold_161:95227-95248 -
  29. scaffold_154:73661-73682 -
  30. scaffold_94:741307-741328 -
  31. scaffold_74:859963-859984 -
  32. scaffold_34:473971-473992 -
  33. scaffold_17:1404538-1404559 -
  34. scaffold_15:555328-555349 -
  35. scaffold_8:745167-745188 -
  36. scaffold_8:1901220-1901241 -
  37. scaffold_2:1727122-1727143 -
  38. scaffold_1:871389-871410 -
  39. scaffold_88:93562-93583 -
  40. scaffold_8663:3360-3381 -
  41. scaffold_448:105827-105848 -
star
  1. scaffold_2674:7604-7623 -
  2. scaffold_1384:11653-11672 -
  3. scaffold_535:51434-51453 -
  4. scaffold_535:53746-53765 -
  5. scaffold_458:92612-92631 -
  6. scaffold_458:95301-95320 -
  7. scaffold_445:146030-146049 -
  8. scaffold_438:94491-94510 -
  9. scaffold_389:104456-104475 -
  10. scaffold_307:110930-110949 -
  11. scaffold_266:322278-322297 -
  12. scaffold_230:59325-59344 -
  13. scaffold_218:29919-29938 -
  14. scaffold_185:460691-460710 -
  15. scaffold_154:73720-73739 -
  16. scaffold_108:300315-300334 -
  17. scaffold_82:432086-432105 -
  18. scaffold_46:741584-741603 -
  19. scaffold_34:475198-475217 -
  20. scaffold_2:2197663-2197682 -

Sense Strand Reads

ACATCTTAGACCTCTCTGCCGCATTTGATACAGTAGATCAAATCCTCGGAAACCCAGGGTTATTTTGCTCTAACGTTTCACTCGCGAGTGAAACGTTAGAGGAAAATACCCCTGGGTTTCCGAGGATGGGTtGtTgtTGtttTggTggTgtttgGtgTGGttgtggGt
*****************************************************((((((.((((((.(((((((((((((((....))))))))))))))).)))))).))))))....((.......)).************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR039756
"Gastrula, untreated"		 SRR039760
"Late planula, untreated"		 SRR039758
"Early planula, untreated"		 SRR039762
"Metamorphosing individuals, untreated"		 SRR039765
"Primary polyps, oxidized"		 SRR039763
"Metamorphosing individuals, oxidized"		 SRR039764
"Primary polyps, untreated"		 SRR039761
"Late planula, oxidized"		 SRR039759
"Early planula, oxidized"		 SRR039754
"Adult males, untreated"		 SRR039755
"Adult males, oxidized"		 SRR039731
"Adult females, untreated"		 SRR039757
"Gastrula, oxidized"
..............................................................................................GTTAGAGGAAAATACCCCTGGG.................................................... 22 0 20 7.00 140 53 30 0 0 35 22 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGT................................................... 22 0 20 2.15 43 0 27 0 0 0 0 0 11 0 0 3 2 0
...............................................................................................TTAGAGGAAAATACCCCTGG..................................................... 20 0 20 2.00 40 16 0 0 24 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGG.................................................... 21 0 20 1.70 34 0 0 32 0 0 0 0 0 0 2 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGA................................................... 22 1 20 1.45 29 21 0 2 5 0 0 0 0 0 0 0 0 1
..............................................................................................GTTAGAGGAAAATACCCCTT...................................................... 20 1 20 1.25 25 3 9 9 0 0 0 4 0 0 0 0 0 0
......................................................................................................................................TCATGAAATCCTCCTCAAACGACTGGAAC..... 29 0 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGA.................................................... 21 1 20 0.40 8 0 0 2 6 0 0 0 0 0 0 0 0 0
............................................CTCGGAAACCCAGGGTTATT........................................................................................................ 20 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TTGGAGGAAAATACCCCTGGGT................................................... 22 1 20 0.20 4 1 0 0 0 3 0 0 0 0 0 0 0 0
......................................................................................................................................TCATGAAATCCTCCTCAAACGACTGGA....... 27 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GTTGGAGGAAAATACCCCTGG..................................................... 21 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGA................................................... 23 1 20 0.15 3 1 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGG..................................................... 21 0 20 0.15 3 0 0 2 0 0 0 0 0 0 1 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGTT.................................................. 23 0 20 0.15 3 0 0 0 0 0 0 0 0 3 0 0 0 0
................................................................................................TAGAGGAAAATACCCCTGCG.................................................... 20 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGC.................................................... 22 1 20 0.10 2 0 0 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGT................................................... 23 0 20 0.10 2 0 0 0 1 0 0 0 0 0 0 0 0 1
...............................................................................................TTAGAGGAAAATACCCCTCG..................................................... 20 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGC................................................... 22 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TAGAGGAAAATACCCCTGGGAA.................................................. 22 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACTCCTGGGAA.................................................. 23 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTACAGGAAAATACCCCTGGG.................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTG...................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGACAATACCCCTGGG.................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGGGTT.................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGACAATCCCCCTGGGA................................................... 23 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................GGTAGAGGAAAAGACCCCTGGG.................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGTTA................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGCGGAACATACCCCTGGGT................................................... 22 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGCAAATACACCTGGG.................................................... 22 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATCCCCCTGG..................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACTCCTT...................................................... 20 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGC.................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGCC.................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................GTTAGAGGAAATTACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................TTAGAGTAAAAGACCCCTGGGT................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTGGGAAT................................................. 24 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACACCTGGG.................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GATAGAGGAAAATACCCCTGGC.................................................... 22 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTGGAGGAAAATACCCCTGGGTT.................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAGAATACCCCTGGGTT.................................................. 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGGGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................GTTAGAGGAAATTACCCCTT...................................................... 20 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................GGTAGAGGAAAATATCCCTGGG.................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGTCAAATACCCCTGG..................................................... 20 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGCGGAAAATACCCCTGGGT................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................AAACGTTAGAGGAAAATACA.......................................................... 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................TTAGAGGAAAATACCCCTG...................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAGATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................GTTAGAGGACAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................GTTAGAGGAAAATACCCCTGC..................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAGATACCCCTGGGT................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAAATACACCTCG..................................................... 20 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTGGAGGAAAATACCCCTGGGA................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................TCTAACGTTTCACTCGCGAG................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................TTAGAGGAAAATACCCCCGG..................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGGGGAAAATACCCCTGGGTG.................................................. 23 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGCAAATACCCCTGGGT................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................GGTAGAGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................AGAGGAAAATACCCCTGGGT................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTTGGAGGAAAATACCCCTGGG.................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGAAACTACCCCTGGG.................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTAGAGGTAAATACCCCTGGGA................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTAGAATCTGGAGAGACGGCGTAAACTATGTCATCTAGTTTAGGAGCCTTTGGGTCCCAATAAAACGAGATTGCAAAGTGAGCGCTCACTTTGCAATCTCCTTTTATGGGGACCCAAAGGCTCCTACCCAtCtAgtACtttAggAggAgtttgCtgACCttgtggCt
*************************************((((((.((((((.(((((((((((((((....))))))))))))))).)))))).))))))....((.......)).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR039731
"Adult females, untreated"		 SRR039754
"Adult males, untreated"		 SRR039764
"Primary polyps, untreated"		 SRR039728
"Unfertilized eggs, oxidized"		 SRR039765
"Primary polyps, oxidized"
...........................................................ATTAAAACGAGATTGCAAAGT........................................................................................ 21 1 2 1.00 2 1 1 0 0 0
...........................................................AATAAAACGAGATTGCAAAGT........................................................................................ 21 0 2 0.50 1 1 0 0 0 0
...........................................................TATAAAACGAGATTGCAAAGT........................................................................................ 21 1 20 0.35 7 3 2 2 0 0
..........................................................TAATAAAACGAGATTGCAAAGT........................................................................................ 22 1 4 0.25 1 1 0 0 0 0
............................................................ATAAAACGAGATTGCAAAGT........................................................................................ 20 0 20 0.15 3 0 2 0 1 0
.................................................................ACGAGATTGCAAAGTGAGC.................................................................................... 19 0 20 0.05 1 1 0 0 0 0
.............................................................TTTAACGAGATTGCAAAGT........................................................................................ 19 2 20 0.05 1 1 0 0 0 0
............................................................................................TGCAATCTCATTTTATGGGGAC...................................................... 22 1 20 0.05 1 0 0 0 0 1
............................................................TTTAAACGAGAGTGCAAAGT........................................................................................ 20 3 20 0.05 1 1 0 0 0 0
..............................................................AAAACGAGATTGCAAAGT........................................................................................ 18 0 20 0.05 1 1 0 0 0 0
............................................................TTTAAACGAGATTGCAAAGT........................................................................................ 20 2 20 0.05 1 1 0 0 0 0

Generated: 08/21/2014 at 09:13 AM